Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Dpo4 extension ternary complex with disordered A opposite an oxoG in anti conformation
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 29 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 3gii_D_DG802_DT803 | NAN | NANT | 0 | 0.66 |
| 02 | 3gii_D_DT803_DT804 | NAN | NANT | 0 | 0.71 |
| 03 | 3gii_D_DT804_DG805 | NAN | NANT | 0 | 0.60 |
| 04 | 3gii_D_DG805_DG806 | BBB | BB00 | 22 | 0.25 |
| 05 | 3gii_D_DG806_DA807 | BBB | BB00 | 51 | 0.22 |
| 06 | 3gii_D_DA807_DT808 | B-A | BA05 | 76 | 0.18 |
| 07 | 3gii_D_DT808_DG809 | BBB | BB01 | 40 | 0.27 |
| 08 | 3gii_D_DG809_DG810 | BBw | BB02 | 42 | 0.31 |
| 09 | 3gii_D_DG810_DT811 | BBB | BB00 | 60 | 0.23 |
| 10 | 3gii_D_DT811_DA812 | BBB | BB01 | 62 | 0.16 |
| 11 | 3gii_D_DA812_DG813 | BBB | BB01 | 38 | 0.30 |
| 12 | 3gii_E_DC901_DT902 | A-B | AB05 | 82 | 0.26 |
| 13 | 3gii_E_DT902_DA903 | OPN | OP21 | 53 | 0.47 |
| 14 | 3gii_E_DA903_DA904 | B-A | BA01 | 17 | 0.29 |
| 15 | 3gii_E_DA904_DC905 | NAN | NANT | 0 | 0.33 |
| 16 | 3gii_E_DC905_8OG906 | NAN | NANT | 0 | 0.54 |
| 17 | 3gii_E_8OG906_DC907 | NAN | NANT | 0 | 0.60 |
| 18 | 3gii_E_DC907_DT908 | BBB | BB01 | 52 | 0.28 |
| 19 | 3gii_E_DT908_DA909 | B12 | BB04 | 16 | 0.24 |
| 20 | 3gii_E_DA909_DC910 | B-A | BA05 | 97 | 0.23 |
| 21 | 3gii_E_DC910_DC911 | BBB | BB01 | 57 | 0.18 |
| 22 | 3gii_E_DC911_DA912 | BBB | BB00 | 88 | 0.21 |
| 23 | 3gii_E_DA912_DT913 | BBB | BB00 | 90 | 0.17 |
| 24 | 3gii_E_DT913_DC914 | NAN | NANT | 0 | 0.34 |
| 25 | 3gii_E_DC914_DC915 | NAN | NANT | 0 | 0.55 |
| 26 | 3gii_E_DC915_DA916 | NAN | NANT | 0 | 0.55 |
| 27 | 3gii_E_DA916_DA917 | B12 | BB04 | 22 | 0.25 |
| 28 | 3gii_E_DA917_DC918 | B-A | BA01 | 45 | 0.23 |
| 29 | 3gii_E_DC918_DC919 | NAN | NANT | 0 | 0.42 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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| visible |
| Color by NtC (balls) |
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| A | ||||
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| A-B | ||||
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| B-A | ||||
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| B | ||||
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| IC | ||||
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| OPN | ||||
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| Z | ||||
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