Conformers:
ABBIImiBZICOPNSYNN
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The structural basis for recognition of the preQ0 metabolite by an unusually small riboswitch aptamer domain
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 32 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 3gca_A_C1_U2 | AAA | AA00 | 92 | 0.23 |
| 02 | 3gca_A_U2_G3 | AAA | AA00 | 81 | 0.17 |
| 03 | 3gca_A_G3_G4 | AAw | AA01 | 55 | 0.21 |
| 04 | 3gca_A_G4_G5 | AAA | AA00 | 65 | 0.24 |
| 05 | 3gca_A_G5_U6 | AAu | AA12 | 67 | 0.51 |
| 06 | 3gca_A_U6_C7 | AAA | AA08 | 56 | 0.56 |
| 07 | 3gca_A_C7_G8 | NAN | NANT | 0 | 0.58 |
| 08 | 3gca_A_G8_C9 | NAN | NANT | 0 | 0.69 |
| 09 | 3gca_A_C9_A10 | AAA | AA08 | 63 | 0.45 |
| 10 | 3gca_A_A10_G11 | NAN | NANT | 0 | 0.62 |
| 11 | 3gca_A_G11_U12 | NAN | NANT | 0 | 2.21 |
| 12 | 3gca_A_U12_A13 | NAN | NANT | 0 | 1.24 |
| 13 | 3gca_A_A13_A14 | AAA | AA08 | 43 | 0.43 |
| 14 | 3gca_A_A14_C15 | AAA | AA08 | 91 | 0.18 |
| 15 | 3gca_A_C15_C16 | AAA | AA00 | 48 | 0.27 |
| 16 | 3gca_A_C16_C17 | AAA | AA00 | 69 | 0.23 |
| 17 | 3gca_A_C17_C18 | AAA | AA00 | 93 | 0.12 |
| 18 | 3gca_A_C18_A19 | AAA | AA00 | 63 | 0.23 |
| 19 | 3gca_A_A19_G20 | A-B | AB05 | 61 | 0.28 |
| 20 | 3gca_A_G20_U21 | NAN | NANT | 0 | 0.85 |
| 21 | 3gca_A_U21_U22 | NAN | NANT | 0 | 1.87 |
| 22 | 3gca_A_U22_A23 | NAN | NANT | 0 | 1.69 |
| 23 | 3gca_A_A23_A24 | OPN | OP06 | 72 | 0.31 |
| 24 | 3gca_A_A24_C25 | AAA | AA00 | 86 | 0.19 |
| 25 | 3gca_A_C25_A26 | AAw | AA05 | 85 | 0.26 |
| 26 | 3gca_A_A26_A27 | AAA | AA08 | 79 | 0.28 |
| 27 | 3gca_A_A27_A28 | AAu | AA12 | 38 | 0.30 |
| 28 | 3gca_A_A28_A29 | AAA | AA00 | 15 | 0.34 |
| 29 | 3gca_A_A29_C30 | AAA | AA00 | 63 | 0.28 |
| 30 | 3gca_A_C30_A31 | AAA | AA00 | 17 | 0.26 |
| 31 | 3gca_A_A31_A32 | AAu | AA12 | 52 | 0.46 |
| 32 | 3gca_A_A32_G33 | NAN | NANT | 0 | 0.51 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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