Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
GR DNA Binding domain: Pal complex-35
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 30 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 3g9i_D_DT1_DA2 | BBB | BB00 | 86 | 0.21 |
| 02 | 3g9i_D_DA2_DG3 | BBB | BB00 | 83 | 0.17 |
| 03 | 3g9i_D_DG3_DA4 | B12 | BB04 | 79 | 0.24 |
| 04 | 3g9i_D_DA4_DA5 | BBB | BB00 | 76 | 0.14 |
| 05 | 3g9i_D_DA5_DC6 | BBB | BB01 | 55 | 0.29 |
| 06 | 3g9i_D_DC6_DA7 | BBB | BB01 | 76 | 0.13 |
| 07 | 3g9i_D_DA7_DA8 | BBB | BB01 | 89 | 0.15 |
| 08 | 3g9i_D_DA8_DA9 | BBB | BB01 | 30 | 0.24 |
| 09 | 3g9i_D_DA9_DA10 | BBB | BB01 | 82 | 0.15 |
| 10 | 3g9i_D_DA10_DT11 | BBB | BB01 | 86 | 0.25 |
| 11 | 3g9i_D_DT11_DG12 | BBB | BB00 | 61 | 0.19 |
| 12 | 3g9i_D_DG12_DT13 | BBB | BB00 | 75 | 0.31 |
| 13 | 3g9i_D_DT13_DT14 | BBB | BB00 | 79 | 0.19 |
| 14 | 3g9i_D_DT14_DC15 | BBB | BB01 | 58 | 0.27 |
| 15 | 3g9i_D_DC15_DT16 | BBB | BB01 | 35 | 0.31 |
| 16 | 3g9i_C_DA1_DA2 | BBB | BB00 | 25 | 0.38 |
| 17 | 3g9i_C_DA2_DG3 | BBB | BB01 | 71 | 0.24 |
| 18 | 3g9i_C_DG3_DA4 | B12 | BB04 | 48 | 0.27 |
| 19 | 3g9i_C_DA4_DA5 | BBB | BB00 | 38 | 0.16 |
| 20 | 3g9i_C_DA5_DC6 | BBB | BB00 | 54 | 0.26 |
| 21 | 3g9i_C_DC6_DA7 | BBB | BB00 | 44 | 0.15 |
| 22 | 3g9i_C_DA7_DT8 | BBB | BB00 | 77 | 0.21 |
| 23 | 3g9i_C_DT8_DT9 | BBB | BB00 | 63 | 0.22 |
| 24 | 3g9i_C_DT9_DT10 | BBB | BB01 | 94 | 0.18 |
| 25 | 3g9i_C_DT10_DT11 | BBB | BB01 | 92 | 0.23 |
| 26 | 3g9i_C_DT11_DG12 | BBB | BB00 | 74 | 0.21 |
| 27 | 3g9i_C_DG12_DT13 | BBB | BB00 | 76 | 0.35 |
| 28 | 3g9i_C_DT13_DT14 | BBB | BB00 | 94 | 0.22 |
| 29 | 3g9i_C_DT14_DC15 | B-A | BA05 | 87 | 0.17 |
| 30 | 3g9i_C_DC15_DT16 | NAN | NANT | 0 | 2.06 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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