Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structure of the FOXM1 DNA binding
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 40 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 3g73_C_DA1_DA2 | NAN | NANT | 0 | 0.42 |
| 02 | 3g73_C_DA2_DA3 | BBB | BB01 | 65 | 0.34 |
| 03 | 3g73_C_DA3_DT4 | BBB | BB00 | 74 | 0.21 |
| 04 | 3g73_C_DT4_DT5 | BBB | BB01 | 85 | 0.16 |
| 05 | 3g73_C_DT5_DG6 | BBB | BB01 | 73 | 0.15 |
| 06 | 3g73_C_DG6_DT7 | BBB | BB00 | 30 | 0.38 |
| 07 | 3g73_C_DT7_DT8 | B-A | BA05 | 92 | 0.24 |
| 08 | 3g73_C_DT8_DT9 | BBB | BB01 | 35 | 0.26 |
| 09 | 3g73_C_DT9_DA10 | BBB | BB01 | 73 | 0.17 |
| 10 | 3g73_C_DA10_DT11 | BBB | BB01 | 88 | 0.17 |
| 11 | 3g73_C_DT11_DA12 | BBB | BB01 | 76 | 0.16 |
| 12 | 3g73_C_DA12_DA13 | BBB | BB00 | 53 | 0.17 |
| 13 | 3g73_C_DA13_DA14 | B12 | BB04 | 63 | 0.18 |
| 14 | 3g73_C_DA14_DC15 | BBB | BB01 | 57 | 0.30 |
| 15 | 3g73_C_DC15_DA16 | miB | BB10 | 32 | 0.41 |
| 16 | 3g73_C_DA16_DG17 | BBB | BB00 | 88 | 0.12 |
| 17 | 3g73_C_DG17_DC18 | BBB | BB00 | 82 | 0.27 |
| 18 | 3g73_C_DC18_DC19 | BBB | BB00 | 93 | 0.12 |
| 19 | 3g73_C_DC19_DC20 | B12 | BB04 | 26 | 0.39 |
| 20 | 3g73_C_DC20_DG21 | miB | BB10 | 33 | 0.48 |
| 21 | 3g73_D_DT1_DT2 | A-B | AB01 | 51 | 0.27 |
| 22 | 3g73_D_DT2_DC3 | BBB | BB00 | 73 | 0.17 |
| 23 | 3g73_D_DC3_DG4 | BBB | BB00 | 78 | 0.24 |
| 24 | 3g73_D_DG4_DG5 | B12 | BB04 | 59 | 0.20 |
| 25 | 3g73_D_DG5_DG6 | B12 | BB04 | 92 | 0.15 |
| 26 | 3g73_D_DG6_DC7 | BBB | BB00 | 88 | 0.16 |
| 27 | 3g73_D_DC7_DT8 | BBB | BB00 | 85 | 0.16 |
| 28 | 3g73_D_DT8_DG9 | BBB | BB01 | 87 | 0.15 |
| 29 | 3g73_D_DG9_DT10 | BBB | BB01 | 72 | 0.23 |
| 30 | 3g73_D_DT10_DT11 | B-A | BA05 | 86 | 0.25 |
| 31 | 3g73_D_DT11_DT12 | BBB | BB01 | 42 | 0.28 |
| 32 | 3g73_D_DT12_DA13 | BBB | BB01 | 84 | 0.14 |
| 33 | 3g73_D_DA13_DT14 | B-A | BA05 | 69 | 0.17 |
| 34 | 3g73_D_DT14_DA15 | BBB | BB01 | 64 | 0.18 |
| 35 | 3g73_D_DA15_DA16 | BBB | BB01 | 85 | 0.19 |
| 36 | 3g73_D_DA16_DA17 | BBB | BB00 | 32 | 0.27 |
| 37 | 3g73_D_DA17_DC18 | B-A | BA01 | 26 | 0.35 |
| 38 | 3g73_D_DC18_DA19 | A-B | AB01 | 61 | 0.29 |
| 39 | 3g73_D_DA19_DA20 | BBB | BB00 | 81 | 0.11 |
| 40 | 3g73_D_DA20_DT21 | BBB | BB00 | 86 | 0.19 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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