Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
GR DNA binding domain:FKBP5 complex, 18bp
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 34 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 3g6p_C_DC1_DC2 | BBB | BB00 | 58 | 0.18 |
| 02 | 3g6p_C_DC2_DA3 | BBB | BB00 | 58 | 0.35 |
| 03 | 3g6p_C_DA3_DG4 | BBB | BB00 | 69 | 0.16 |
| 04 | 3g6p_C_DG4_DA5 | BBB | BB00 | 63 | 0.26 |
| 05 | 3g6p_C_DA5_DA6 | BBB | BB00 | 36 | 0.18 |
| 06 | 3g6p_C_DA6_DC7 | B-A | BA05 | 77 | 0.34 |
| 07 | 3g6p_C_DC7_DA8 | BBB | BB00 | 25 | 0.24 |
| 08 | 3g6p_C_DA8_DC9 | BBB | BB00 | 58 | 0.33 |
| 09 | 3g6p_C_DC9_DC10 | BBB | BB01 | 73 | 0.22 |
| 10 | 3g6p_C_DC10_DC11 | BBB | BB01 | 45 | 0.27 |
| 11 | 3g6p_C_DC11_DT12 | B-A | BA05 | 78 | 0.36 |
| 12 | 3g6p_C_DT12_DG13 | NAN | NANT | 0 | 0.60 |
| 13 | 3g6p_C_DG13_DT14 | BB2 | BB07 | 50 | 0.37 |
| 14 | 3g6p_C_DT14_DT15 | BBB | BB00 | 98 | 0.10 |
| 15 | 3g6p_C_DT15_DC16 | BBB | BB00 | 72 | 0.21 |
| 16 | 3g6p_C_DC16_DT17 | BBB | BB00 | 77 | 0.22 |
| 17 | 3g6p_C_DT17_DG18 | BBB | BB00 | 92 | 0.17 |
| 18 | 3g6p_D_DC1_DC2 | BBB | BB00 | 65 | 0.27 |
| 19 | 3g6p_D_DC2_DA3 | B12 | BB04 | 49 | 0.19 |
| 20 | 3g6p_D_DA3_DG4 | BBB | BB00 | 68 | 0.23 |
| 21 | 3g6p_D_DG4_DA5 | BBB | BB00 | 70 | 0.25 |
| 22 | 3g6p_D_DA5_DA6 | BBw | BB02 | 56 | 0.24 |
| 23 | 3g6p_D_DA6_DC7 | BBB | BB01 | 27 | 0.37 |
| 24 | 3g6p_D_DC7_DA8 | BBB | BB00 | 67 | 0.29 |
| 25 | 3g6p_D_DA8_DG9 | BBB | BB00 | 83 | 0.20 |
| 26 | 3g6p_D_DG9_DG10 | BBB | BB00 | 84 | 0.32 |
| 27 | 3g6p_D_DG10_DG11 | B12 | BB04 | 60 | 0.20 |
| 28 | 3g6p_D_DG11_DT12 | BBB | BB01 | 90 | 0.12 |
| 29 | 3g6p_D_DT12_DG13 | BBB | BB00 | 55 | 0.19 |
| 30 | 3g6p_D_DG13_DT14 | B12 | BB04 | 79 | 0.18 |
| 31 | 3g6p_D_DT14_DT15 | BBB | BB00 | 69 | 0.17 |
| 32 | 3g6p_D_DT15_DC16 | BBB | BB01 | 80 | 0.18 |
| 33 | 3g6p_D_DC16_DT17 | BBB | BB00 | 67 | 0.26 |
| 34 | 3g6p_D_DT17_DG18 | BBB | BB00 | 70 | 0.22 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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