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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Complex of Mth0212 and a 4 bp dsDNA with 3'-overhang

Results of the assignment of 21 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
013g2d_G_DC4_DA5BBBBB00560.35 BB00
023g2d_G_DA5_DG6BBBBB01850.16 BB01
033g2d_G_DG6_DG7BBBBB00330.26 BB00
043g2d_K_DC1_DC2NANNANT00.48 BA01
053g2d_K_DC2_DT3BBBBB01120.31 BB01
063g2d_K_DT3_DG4BBBBB00340.25 BB00
073g2d_K_DG4_DU5NANNANT00.35 BA08
083g2d_K_DU5_DG6NANNANT00.41 BB10
093g2d_K_DG6_DC7NANNANT00.67 BB10
103g2d_K_DC7_DG8NANNANT00.72 ZZ01
113g2d_H_DC4_DA5NANNANT00.86 AB2S
123g2d_H_DA5_DG6SYNBBS1140.39 BBS1
133g2d_H_DG6_DG7A-BAB03290.35 AB03
143g2d_I_DC1_DC2NANNANT00.34 BA05
153g2d_I_DC2_DT3NANNANT00.59 AB04
163g2d_I_DT3_DG4BBBBB00500.28 BB00
173g2d_I_DG4_DU5B-ABA05120.39 BA05
183g2d_I_DU5_DG6NANNANT00.60 AA06
193g2d_I_DG6_DC7NANNANT00.45 AB02
203g2d_I_DC7_DG8NANNANT00.48 AB04
213g2d_I_DG8_DA9NANNANT00.71 AA07

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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