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Conformers: ABBIImiBZICOPNSYNN
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Crystal structure of the beta-beta-alpha-Me type II restriction endonuclease Hpy99I

Results of the assignment of 32 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
013fc3_C_DC.A-4_DT.A-3AAAAA00700.32 AA00
023fc3_C_DC.B-4_DT.B-3AAAAA00690.32 AA00
033fc3_C_DT.A-3_DC.A-2AAAAA00530.34 AA00
043fc3_C_DT.B-3_DC.B-2AAAAA00530.34 AA00
053fc3_C_DC.A-2_DG.A-1A-BAB01380.23 AB01
063fc3_C_DC.B-2_DG.B-1A-BAB01360.23 AB01
073fc3_C_DG.A-1_DA.A0B-ABA05350.26 BA05
083fc3_C_DG.B-1_DA.B0B-ABA05350.27 BA05
093fc3_C_DA.A0_DC.A1AAAAA02620.35 AA02
103fc3_C_DA.B0_DC.B1AAAAA02590.35 AA02
113fc3_C_DC.A1_DG.A2A-BAB01420.26 AB01
123fc3_C_DC.B1_DG.B2A-BAB01430.25 AB01
133fc3_C_DG.A2_DT.A3B-ABA13180.45 BA13
143fc3_C_DG.B2_DT.B3B-ABA13190.45 BA13
153fc3_C_DT.A3_DA.A4A-BAB05630.32 AB05
163fc3_C_DT.B3_DA.B4A-BAB05640.32 AB05
173fc3_D_DT.A-4_DA.A-3AAAAA00640.49 AA00
183fc3_D_DT.B-4_DA.B-3AAAAA00660.49 AA00
193fc3_D_DA.A-3_DC.A-2AAAAA00430.32 AA00
203fc3_D_DA.B-3_DC.B-2AAAAA00430.32 AA00
213fc3_D_DC.A-2_DG.A-1A-BAB01420.25 AB01
223fc3_D_DC.B-2_DG.B-1A-BAB01430.25 AB01
233fc3_D_DG.A-1_DT.A0B-ABA05400.24 BA05
243fc3_D_DG.B-1_DT.B0B-ABA05410.23 BA05
253fc3_D_DT.A0_DC.A1AAAAA02610.36 AA02
263fc3_D_DT.B0_DC.B1AAAAA02630.37 AA02
273fc3_D_DC.A1_DG.A2A-BAB01510.24 AB01
283fc3_D_DC.B1_DG.B2A-BAB01500.25 AB01
293fc3_D_DG.A2_DA.A3NANNANT00.41 BA10
303fc3_D_DG.B2_DA.B3NANNANT00.40 BA10
313fc3_D_DA.A3_DG.A4A-BAB05620.23 AB05
323fc3_D_DA.B3_DG.B4A-BAB05540.23 AB05

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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