DNATCO v4.1: results

Crystal structure of the FMN riboswitch bound to FMN, split RNA.

Results of the assignment of 107 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	3f4e_X_G1_G2	AAA	AA04	47	0.46	AA04
002	3f4e_X_G2_A3	AAA	AA00	53	0.21	AA00
003	3f4e_X_A3_U4	AAA	AA08	75	0.29	AA08
004	3f4e_X_U4_C5	NAN	NANT	0	0.53	AA10
005	3f4e_X_C5_U6	AAA	AA08	60	0.35	AA08
006	3f4e_X_U6_U7	AAA	AA00	71	0.18	AA00
007	3f4e_X_U7_C8	AAA	AA00	79	0.24	AA00
008	3f4e_X_C8_G9	AAA	AA00	54	0.32	AA00
009	3f4e_X_G9_G10	NAN	NANT	0	1.10	OP28
010	3f4e_X_G10_G11	B-A	BA08	52	0.42	BA08
011	3f4e_X_G11_G12	AAA	AA02	68	0.14	AA02
012	3f4e_X_G12_C13	NAN	NANT	0	0.44	IC07
013	3f4e_X_C13_A14	NAN	NANT	0	0.48	OP07
014	3f4e_X_A14_G15	AAA	AA04	56	0.49	AA04
015	3f4e_X_G15_G16	AAw	AA10	80	0.14	AA10
016	3f4e_X_G16_G17	AAA	AA00	12	0.36	AA00
017	3f4e_X_G17_U18	AAA	AA00	82	0.18	AA00
018	3f4e_X_U18_G19	AAA	AA00	55	0.30	AA00
019	3f4e_X_G19_A20	NAN	NANT	0	0.18	OP04
020	3f4e_X_A20_A21	AAA	AA00	62	0.30	AA00
021	3f4e_X_A21_A22	NAN	NANT	0	0.61	AB04
022	3f4e_X_A22_U23	NAN	NANT	0	0.64	OP29
023	3f4e_X_U23_U24	OPN	OP20	35	0.52	OP20
024	3f4e_X_U24_C25	NAN	NANT	0	0.28	OP12
025	3f4e_X_C25_C26	AAA	AA08	66	0.21	AA08
026	3f4e_X_C26_C27	AAA	AA00	57	0.28	AA00
027	3f4e_X_C27_G28	AAA	AA08	54	0.48	AA08
028	3f4e_X_G28_A29	AAA	AA00	51	0.20	AA00
029	3f4e_X_A29_C30	AAA	AA00	77	0.24	AA00
030	3f4e_X_C30_C31	AAA	AA00	86	0.23	AA00
031	3f4e_X_C31_G32	A-B	AB05	52	0.20	AB05
032	3f4e_X_G32_G33	NAN	NANT	0	0.62	OP10
033	3f4e_X_G33_U34	AAA	AA00	68	0.25	AA00
034	3f4e_X_U34_G35	AAA	AA00	75	0.21	AA00
035	3f4e_X_G35_G36	AAA	AA00	73	0.27	AA00
036	3f4e_X_G36_U37	NAN	NANT	0	0.41	AA03
037	3f4e_X_U37_A38	NAN	NANT	0	2.78	OP01
038	3f4e_X_A38_U39	NAN	NANT	0	1.43	BB20
039	3f4e_X_U39_A40	NAN	NANT	0	0.46	OP20
040	3f4e_X_A40_G41	OPN	OP14	28	0.22	OP14
041	3f4e_X_G41_U42	AAA	AA04	44	0.47	AA04
042	3f4e_X_U42_C43	NAN	NANT	0	1.72	OP16
043	3f4e_X_C43_C44	AAA	AA00	28	0.25	AA00
044	3f4e_X_C44_A45	AAA	AA00	76	0.28	AA00
045	3f4e_X_A45_C46	AAA	AA00	74	0.27	AA00
046	3f4e_X_C46_G47	AAA	AA00	85	0.14	AA00
047	3f4e_X_G47_A48	AAA	AA09	66	0.28	AA09
048	3f4e_X_A48_A49	NAN	NANT	0	0.73	AA12
049	3f4e_X_A49_A50	AAA	AA00	72	0.26	AA00
050	3f4e_X_A50_G51	AAA	AA00	92	0.12	AA00
051	3f4e_X_G51_C52	AAA	AA00	94	0.12	AA00
052	3f4e_X_C52_U53	AAA	AA00	84	0.14	AA00
053	3f4e_Y_G57_C58	AAA	AA08	61	0.32	AA08
054	3f4e_Y_C58_U59	AAA	AA00	83	0.18	AA00
055	3f4e_Y_U59_U60	AAA	AA08	90	0.16	AA08
056	3f4e_Y_U60_U61	NAN	NANT	0	0.39	AB04
057	3f4e_Y_U61_G62	NAN	NANT	0	1.47	OP25
058	3f4e_Y_G62_A63	AAA	AA09	38	0.29	AA09
059	3f4e_Y_A63_U64	NAN	NANT	0	1.48	IC02
060	3f4e_Y_U64_U65	B-A	BA16	96	0.08	BA16
061	3f4e_Y_U65_U66	AAA	AA00	94	0.13	AA00
062	3f4e_Y_U66_G67	AAA	AA00	85	0.13	AA00
063	3f4e_Y_G67_G68	AAA	AA00	71	0.20	AA00
064	3f4e_Y_G68_U69	AAA	AA00	90	0.14	AA00
065	3f4e_Y_U69_G70	AAA	AA00	75	0.24	AA00
066	3f4e_Y_G70_A71	OPN	OP03	55	0.34	OP03
067	3f4e_Y_A71_A72	AAA	AA08	35	0.27	AA08
068	3f4e_Y_A72_A73	NAN	NANT	0	0.56	AB04
069	3f4e_Y_A73_U74	NAN	NANT	0	1.73	OP09
070	3f4e_Y_U74_U75	OPN	OP20	26	0.46	OP20
071	3f4e_Y_U75_C76	OPN	OP12	21	0.47	OP12
072	3f4e_Y_C76_C77	AAA	AA04	64	0.37	AA04
073	3f4e_Y_C77_A78	AAA	AA00	84	0.18	AA00
074	3f4e_Y_A78_A79	AAA	AA00	82	0.20	AA00
075	3f4e_Y_A79_A80	AAA	AA00	78	0.19	AA00
076	3f4e_Y_A80_A81	AAw	AA01	81	0.18	AA01
077	3f4e_Y_A81_C82	AAA	AA00	65	0.26	AA00
078	3f4e_Y_C82_C83	AAA	AA00	85	0.21	AA00
079	3f4e_Y_C83_G84	AAA	AA08	19	0.35	AA08
080	3f4e_Y_G84_A85	NAN	NANT	0	0.68	OP02
081	3f4e_Y_A85_C86	AAA	AA00	52	0.20	AA00
082	3f4e_Y_C86_A87	AAA	AA00	82	0.17	AA00
083	3f4e_Y_A87_G88	AAA	AA00	74	0.20	AA00
084	3f4e_Y_G88_U89	AAA	AA03	50	0.26	AA03
085	3f4e_Y_U89_A90	NAN	NANT	0	1.71	OP09
086	3f4e_Y_A90_G91	NAN	NANT	0	0.60	OP26
087	3f4e_Y_G91_A92	NAN	NANT	0	0.35	OP20
088	3f4e_Y_A92_G93	OPN	OP14	82	0.25	OP14
089	3f4e_Y_G93_U94	A-B	AB04	34	0.34	AB04
090	3f4e_Y_U94_C95	OPN	OP12	69	0.36	OP12
091	3f4e_Y_C95_U96	AAA	AA04	87	0.21	AA04
092	3f4e_Y_U96_G97	AAA	AA08	87	0.18	AA08
093	3f4e_Y_G97_G98	AAA	AA08	57	0.41	AA08
094	3f4e_Y_G98_A99	ZZZ	ZZ01	10	0.42	ZZ01
095	3f4e_Y_A99_U100	NAN	NANT	0	0.68	OP21
096	3f4e_Y_U100_G101	OPN	OP11	64	0.30	OP11
097	3f4e_Y_G101_A102	AAA	AA08	87	0.22	AA08
098	3f4e_Y_A102_G103	AAA	AA00	69	0.26	AA00
099	3f4e_Y_G103_A104	NAN	NANT	0	0.48	AA03
100	3f4e_Y_A104_G105	NAN	NANT	0	0.74	AA10
101	3f4e_Y_G105_A106	AAA	AA00	73	0.16	AA00
102	3f4e_Y_A106_A107	AAw	AA01	74	0.31	AA01
103	3f4e_Y_A107_G108	AAA	AA08	67	0.25	AA08
104	3f4e_Y_G108_A109	AAA	AA00	73	0.21	AA00
105	3f4e_Y_A109_U110	AAA	AA04	95	0.23	AA04
106	3f4e_Y_U110_U111	AAA	AA00	84	0.19	AA00
107	3f4e_Y_U111_C112	NAN	NANT	0	0.56	AA10

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 107 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

User-based restraints

Definitions

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