Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Cocrystal structure of Bacillus fragment DNA polymerase I with duplex DNA (open form)
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 21 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 3eyz_B_DC21_DC22 | BBB | BB00 | 81 | 0.31 |
| 02 | 3eyz_B_DC22_DT23 | B12 | BB04 | 83 | 0.23 |
| 03 | 3eyz_B_DT23_DG24 | BBB | BB00 | 97 | 0.11 |
| 04 | 3eyz_B_DG24_DA25 | BBB | BB00 | 95 | 0.18 |
| 05 | 3eyz_B_DA25_DC26 | B-A | BA01 | 81 | 0.26 |
| 06 | 3eyz_B_DC26_DT27 | A-B | AB01 | 79 | 0.31 |
| 07 | 3eyz_B_DT27_DC28 | B-A | BA01 | 56 | 0.28 |
| 08 | 3eyz_B_DC28_DG29 | AAA | AA00 | 74 | 0.19 |
| 09 | 3eyz_B_DG29_DC30 | A-B | AB01 | 77 | 0.25 |
| 10 | 3eyz_C_DA1_DT2 | NAN | NANT | 0 | 0.92 |
| 11 | 3eyz_C_DT2_DG3 | NAN | NANT | 0 | 0.63 |
| 12 | 3eyz_C_DG3_DC4 | AAA | AA00 | 84 | 0.23 |
| 13 | 3eyz_C_DC4_DG5 | AAw | AA01 | 93 | 0.14 |
| 14 | 3eyz_C_DG5_DA6 | A-B | AB04 | 88 | 0.15 |
| 15 | 3eyz_C_DA6_DG7 | BBB | BB00 | 84 | 0.23 |
| 16 | 3eyz_C_DG7_DT8 | BBB | BB00 | 96 | 0.18 |
| 17 | 3eyz_C_DT8_DC9 | BBB | BB00 | 94 | 0.12 |
| 18 | 3eyz_C_DC9_DA10 | BBB | BB00 | 75 | 0.23 |
| 19 | 3eyz_C_DA10_DG11 | B-A | BA01 | 81 | 0.24 |
| 20 | 3eyz_C_DG11_DG12 | A-B | AB01 | 74 | 0.28 |
| 21 | 3eyz_C_DG12_DA13 | B-A | BA01 | 22 | 0.30 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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