Conformers:
ABBIImiBZICOPNSYNN
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Crystal structure of the heterodimeric vaccinia virus mRNA polyadenylate polymerase with three fragments of RNA and 3'-deoxy ATP
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 15 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 3erc_E_DC601_U602 | NAN | NANT | 0 | 0.90 |
| 02 | 3erc_E_U602_U603 | BBB | BB00 | 47 | 0.61 |
| 03 | 3erc_E_U603_DC604 | OPN | OP20 | 35 | 0.42 |
| 04 | 3erc_E_DC604_DC605 | NAN | NANT | 0 | 1.08 |
| 05 | 3erc_F_DC606_U607 | NAN | NANT | 0 | 1.14 |
| 06 | 3erc_F_U607_U608 | BBw | BB16 | 59 | 0.47 |
| 07 | 3erc_F_U608_DC609 | OPN | OP20 | 72 | 0.50 |
| 08 | 3erc_F_DC609_DC610 | NAN | NANT | 0 | 1.19 |
| 09 | 3erc_G_DC500_U501 | NAN | NANT | 0 | 1.21 |
| 10 | 3erc_G_U501_U502 | NAN | NANT | 0 | 0.87 |
| 11 | 3erc_G_U502_DC503 | NAN | NANT | 0 | 0.94 |
| 12 | 3erc_I_DC700_DC701 | NAN | NANT | 0 | 1.64 |
| 13 | 3erc_I_DC701_U702 | NAN | NANT | 0 | 0.25 |
| 14 | 3erc_I_U702_U703 | NAN | NANT | 0 | 0.88 |
| 15 | 3erc_I_U703_DC704 | NAN | NANT | 0 | 0.94 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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