Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal Structure Of Tn5 Transposase Complexed With 5' Phosphorylated Transposon End DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 38 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 3ecp_B_DG1_DA2 | BBw | BB17 | 13 | 0.46 |
| 02 | 3ecp_B_DA2_DC3 | BBB | BB00 | 75 | 0.32 |
| 03 | 3ecp_B_DC3_DT4 | miB | BB10 | 64 | 0.48 |
| 04 | 3ecp_B_DT4_DT5 | BBB | BB00 | 26 | 0.35 |
| 05 | 3ecp_B_DT5_DG6 | BBB | BB00 | 41 | 0.39 |
| 06 | 3ecp_B_DG6_DT7 | BBB | BB00 | 65 | 0.35 |
| 07 | 3ecp_B_DT7_DG8 | BBB | BB00 | 86 | 0.20 |
| 08 | 3ecp_B_DG8_DT9 | BBB | BB01 | 45 | 0.23 |
| 09 | 3ecp_B_DT9_DA10 | A-B | AB03 | 78 | 0.32 |
| 10 | 3ecp_B_DA10_DT11 | BBB | BB01 | 48 | 0.20 |
| 11 | 3ecp_B_DT11_DA12 | B-A | BA05 | 47 | 0.16 |
| 12 | 3ecp_B_DA12_DA13 | A-B | AB03 | 89 | 0.23 |
| 13 | 3ecp_B_DA13_DG14 | BB2 | BB07 | 67 | 0.27 |
| 14 | 3ecp_B_DG14_DA15 | BBB | BB00 | 76 | 0.23 |
| 15 | 3ecp_B_DA15_DG16 | BBB | BB01 | 45 | 0.15 |
| 16 | 3ecp_B_DG16_DT17 | BBB | BB01 | 54 | 0.24 |
| 17 | 3ecp_B_DT17_DC18 | BBB | BB00 | 33 | 0.27 |
| 18 | 3ecp_B_DC18_DA19 | NAN | NANT | 0 | 0.65 |
| 19 | 3ecp_B_DA19_DG20 | NAN | NANT | 0 | 0.41 |
| 20 | 3ecp_C_DC1_DT2 | NAN | NANT | 0 | 2.17 |
| 21 | 3ecp_C_DT2_DG3 | NAN | NANT | 0 | 1.39 |
| 22 | 3ecp_C_DG3_DA4 | NAN | NANT | 0 | 0.56 |
| 23 | 3ecp_C_DA4_DC5 | B-A | BA10 | 54 | 0.31 |
| 24 | 3ecp_C_DC5_DT6 | A-B | AB05 | 30 | 0.24 |
| 25 | 3ecp_C_DT6_DC7 | BBB | BB00 | 40 | 0.19 |
| 26 | 3ecp_C_DC7_DT8 | BBB | BB01 | 32 | 0.26 |
| 27 | 3ecp_C_DT8_DT9 | BBB | BB01 | 21 | 0.25 |
| 28 | 3ecp_C_DT9_DA10 | B-A | BA10 | 44 | 0.29 |
| 29 | 3ecp_C_DA10_DT11 | NAN | NANT | 0 | 0.53 |
| 30 | 3ecp_C_DT11_DA12 | BBB | BB00 | 51 | 0.35 |
| 31 | 3ecp_C_DA12_DC13 | NAN | NANT | 0 | 0.37 |
| 32 | 3ecp_C_DC13_DA14 | NAN | NANT | 0 | 0.36 |
| 33 | 3ecp_C_DA14_DC15 | BBB | BB00 | 45 | 0.29 |
| 34 | 3ecp_C_DC15_DA16 | B12 | BB04 | 74 | 0.19 |
| 35 | 3ecp_C_DA16_DA17 | BBB | BB00 | 54 | 0.16 |
| 36 | 3ecp_C_DA17_DG18 | B-A | BA16 | 19 | 0.26 |
| 37 | 3ecp_C_DG18_DT19 | NAN | NANT | 0 | 0.56 |
| 38 | 3ecp_C_DT19_DC20 | NAN | NANT | 0 | 0.44 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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