Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
CprK OCPA DNA Complex
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 24 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 3e6c_B_DG501_DC502 | BBB | BB00 | 78 | 0.33 |
| 02 | 3e6c_B_DC502_DA503 | BB2 | BB07 | 69 | 0.27 |
| 03 | 3e6c_B_DA503_DT504 | BBB | BB00 | 66 | 0.20 |
| 04 | 3e6c_B_DT504_DT505 | BBB | BB01 | 38 | 0.32 |
| 05 | 3e6c_B_DT505_DA506 | miB | BB15 | 16 | 0.41 |
| 06 | 3e6c_B_DA506_DA507 | miB | BB10 | 60 | 0.21 |
| 07 | 3e6c_B_DA507_DC508 | NAN | NANT | 0 | 0.46 |
| 08 | 3e6c_B_DC508_DA509 | NAN | NANT | 0 | 0.40 |
| 09 | 3e6c_B_DA509_DT510 | BBB | BB00 | 26 | 0.32 |
| 10 | 3e6c_B_DT510_DG511 | BBB | BB00 | 13 | 0.31 |
| 11 | 3e6c_B_DG511_DC512 | BBB | BB00 | 33 | 0.31 |
| 12 | 3e6c_B_DC512_DC513 | NAN | NANT | 0 | 0.98 |
| 13 | 3e6c_A_DG534_DG535 | NAN | NANT | 0 | 0.62 |
| 14 | 3e6c_A_DG535_DC536 | BBB | BB00 | 12 | 0.37 |
| 15 | 3e6c_A_DC536_DA537 | NAN | NANT | 0 | 0.36 |
| 16 | 3e6c_A_DA537_DT538 | BBB | BB01 | 63 | 0.24 |
| 17 | 3e6c_A_DT538_DG539 | BBB | BB01 | 63 | 0.19 |
| 18 | 3e6c_A_DG539_DT540 | BBB | BB00 | 30 | 0.44 |
| 19 | 3e6c_A_DT540_DT541 | BBB | BB00 | 63 | 0.28 |
| 20 | 3e6c_A_DT541_DA542 | BBB | BB00 | 44 | 0.34 |
| 21 | 3e6c_A_DA542_DA543 | NAN | NANT | 0 | 0.43 |
| 22 | 3e6c_A_DA543_DT544 | NAN | NANT | 0 | 0.38 |
| 23 | 3e6c_A_DT544_DG545 | BBB | BB00 | 78 | 0.21 |
| 24 | 3e6c_A_DG545_DC546 | BB2 | BB07 | 22 | 0.34 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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