Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Q138F HincII bound to GTCGAC and Ca2+ (cocrystallized)
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 26 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 3e42_E_DG1_DC2 | BBB | BB00 | 48 | 0.21 |
| 02 | 3e42_E_DC2_DC3 | B-A | BA01 | 6 | 0.34 |
| 03 | 3e42_E_DC3_DG4 | A-B | AB03 | 72 | 0.26 |
| 04 | 3e42_E_DG4_DG5 | BB2 | BB07 | 57 | 0.40 |
| 05 | 3e42_E_DG5_DT6 | NAN | NANT | 0 | 0.43 |
| 06 | 3e42_E_DT6_DC7 | B-A | BA05 | 56 | 0.43 |
| 07 | 3e42_E_DC7_DG8 | AAA | AA03 | 60 | 0.35 |
| 08 | 3e42_E_DG8_DA9 | NAN | NANT | 0 | 0.36 |
| 09 | 3e42_E_DA9_DC10 | BBB | BB00 | 62 | 0.25 |
| 10 | 3e42_E_DC10_DC11 | NAN | NANT | 0 | 0.90 |
| 11 | 3e42_E_DC11_DG12 | BBB | BB00 | 45 | 0.40 |
| 12 | 3e42_E_DG12_DG13 | B12 | BB04 | 13 | 0.32 |
| 13 | 3e42_E_DG13_DC14 | NAN | NANT | 0 | 0.37 |
| 14 | 3e42_F_DG1_DC2 | BBB | BB00 | 31 | 0.27 |
| 15 | 3e42_F_DC2_DC3 | NAN | NANT | 0 | 0.51 |
| 16 | 3e42_F_DC3_DG4 | BBB | BB00 | 62 | 0.39 |
| 17 | 3e42_F_DG4_DG5 | BB2 | BB07 | 40 | 0.38 |
| 18 | 3e42_F_DG5_DT6 | BBw | BB02 | 10 | 0.44 |
| 19 | 3e42_F_DT6_DC7 | B-A | BA01 | 30 | 0.31 |
| 20 | 3e42_F_DC7_DG8 | AAA | AA04 | 57 | 0.39 |
| 21 | 3e42_F_DG8_DA9 | NAN | NANT | 0 | 0.65 |
| 22 | 3e42_F_DA9_DC10 | BBB | BB00 | 25 | 0.41 |
| 23 | 3e42_F_DC10_DC11 | NAN | NANT | 0 | 0.54 |
| 24 | 3e42_F_DC11_DG12 | BBB | BB00 | 24 | 0.37 |
| 25 | 3e42_F_DG12_DG13 | B-A | BA08 | 59 | 0.30 |
| 26 | 3e42_F_DG13_DC14 | NAN | NANT | 0 | 0.51 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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