DNATCO v4.1: results

Crystal Structure of an Intermediate Complex of T7 RNAP and 8nt of RNA

Results of the assignment of 102 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	3e3j_T_DG1_DC2	BBB	BB00	28	0.38	BB00
002	3e3j_T_DC2_DC3	BBB	BB00	28	0.38	BB00
003	3e3j_T_DC3_DG4	BBB	BB00	28	0.38	BB00
004	3e3j_T_DG4_DT5	BBB	BB00	27	0.38	BB00
005	3e3j_T_DT5_DT6	BBB	BB00	27	0.38	BB00
006	3e3j_T_DT6_DT7	NAN	NANT	0	0.52	BB10
007	3e3j_T_DT7_DT8	NAN	NANT	0	1.42	OP05
008	3e3j_T_DT8_DT9	NAN	NANT	0	0.48	AA04
009	3e3j_T_DT9_DA10	AAA	AA00	60	0.14	AA00
010	3e3j_T_DA10_DC11	AAA	AA00	60	0.14	AA00
011	3e3j_T_DC11_DT12	AAA	AA00	60	0.15	AA00
012	3e3j_T_DT12_DC13	AAA	AA00	60	0.14	AA00
013	3e3j_T_DC13_DC14	AAA	AA00	61	0.14	AA00
014	3e3j_T_DC14_DC15	AAA	AA00	61	0.14	AA00
015	3e3j_T_DG20_DT21	AAA	AA00	82	0.22	AA00
016	3e3j_T_DT21_DG22	A-B	AB05	42	0.33	AB05
017	3e3j_T_DG22_DA23	BBB	BB00	83	0.16	BB00
018	3e3j_T_DA23_DG24	BBB	BB01	64	0.24	BB01
019	3e3j_T_DG24_DT25	BBB	BB01	68	0.21	BB01
020	3e3j_T_DT25_DC26	BBB	BB01	72	0.20	BB01
021	3e3j_T_DC26_DG27	B12	BB04	17	0.27	BB04
022	3e3j_T_DG27_DT28	BBB	BB00	60	0.25	BB00
023	3e3j_T_DT28_DA29	BB2	BB07	39	0.26	BB07
024	3e3j_T_DA29_DT30	B-A	BA05	86	0.26	BA05
025	3e3j_T_DT30_DT31	BBB	BB01	12	0.47	BB01
026	3e3j_T_DT31_DA32	B12	BB04	34	0.40	BB04
027	3e3j_N_DT101_DA102	NAN	NANT	0	0.45	BB17
028	3e3j_N_DA102_DA103	BBB	BB01	54	0.28	BB01
029	3e3j_N_DA103_DT104	B-A	BA08	39	0.39	BA08
030	3e3j_N_DT104_DA105	NAN	NANT	0	0.42	BB01
031	3e3j_N_DA105_DC106	BBB	BB01	78	0.22	BB01
032	3e3j_N_DC106_DG107	miB	BB10	65	0.49	BB10
033	3e3j_N_DG107_DA108	miB	BB10	79	0.21	BB10
034	3e3j_N_DA108_DC109	BBB	BB01	63	0.20	BB01
035	3e3j_N_DC109_DT110	BBB	BB01	82	0.18	BB01
036	3e3j_N_DT110_DC111	miB	BB10	36	0.28	BB10
037	3e3j_N_DC111_DA112	BBB	BB00	44	0.34	BB00
038	3e3j_N_DA112_DC113	B-A	BA13	28	0.38	BA13
039	3e3j_N_DA126_DA127	BBB	BB00	27	0.38	BB00
040	3e3j_N_DA127_DA128	BBB	BB00	27	0.38	BB00
041	3e3j_N_DA128_DC129	BBB	BB00	28	0.38	BB00
042	3e3j_N_DC129_DG130	BBB	BB00	28	0.38	BB00
043	3e3j_N_DG130_DG131	BBB	BB00	27	0.38	BB00
044	3e3j_N_DG131_DC132	BBB	BB00	27	0.38	BB00
045	3e3j_X_DG1_DC2	BBB	BB00	27	0.38	BB00
046	3e3j_X_DC2_DC3	BBB	BB00	28	0.38	BB00
047	3e3j_X_DC3_DG4	BBB	BB00	28	0.38	BB00
048	3e3j_X_DG4_DT5	BBB	BB00	27	0.38	BB00
049	3e3j_X_DT5_DT6	BBB	BB00	27	0.38	BB00
050	3e3j_X_DT6_DT7	NAN	NANT	0	0.50	BB17
051	3e3j_X_DT7_DT8	NAN	NANT	0	1.70	OP31
052	3e3j_X_DT8_DT9	ICL	IC01	27	0.52	IC01
053	3e3j_X_DT9_DA10	BBB	BB00	9	0.52	BB00
054	3e3j_X_DA10_DC11	BBB	BB00	26	0.41	BB00
055	3e3j_X_DC11_DT12	BBB	BB00	28	0.38	BB00
056	3e3j_X_DT12_DC13	BBB	BB00	28	0.38	BB00
057	3e3j_X_DC13_DC14	BBB	BB00	28	0.38	BB00
058	3e3j_X_DC14_DC15	BBB	BB00	28	0.38	BB00
059	3e3j_X_DG20_DT21	AAA	AA00	82	0.22	AA00
060	3e3j_X_DT21_DG22	A-B	AB05	43	0.33	AB05
061	3e3j_X_DG22_DA23	BBB	BB00	83	0.16	BB00
062	3e3j_X_DA23_DG24	BBB	BB01	65	0.24	BB01
063	3e3j_X_DG24_DT25	BBB	BB01	67	0.22	BB01
064	3e3j_X_DT25_DC26	BBB	BB01	72	0.20	BB01
065	3e3j_X_DC26_DG27	B12	BB04	17	0.27	BB04
066	3e3j_X_DG27_DT28	BBB	BB00	60	0.25	BB00
067	3e3j_X_DT28_DA29	BB2	BB07	39	0.26	BB07
068	3e3j_X_DA29_DT30	B-A	BA05	86	0.26	BA05
069	3e3j_X_DT30_DT31	BBB	BB01	12	0.47	BB01
070	3e3j_X_DT31_DA32	B12	BB04	34	0.40	BB04
071	3e3j_Y_DT101_DA102	NAN	NANT	0	0.45	BB17
072	3e3j_Y_DA102_DA103	BBB	BB01	54	0.28	BB01
073	3e3j_Y_DA103_DT104	B-A	BA08	39	0.39	BA08
074	3e3j_Y_DT104_DA105	NAN	NANT	0	0.42	BB01
075	3e3j_Y_DA105_DC106	BBB	BB01	79	0.22	BB01
076	3e3j_Y_DC106_DG107	miB	BB10	66	0.49	BB10
077	3e3j_Y_DG107_DA108	miB	BB10	78	0.21	BB10
078	3e3j_Y_DA108_DC109	BBB	BB01	63	0.20	BB01
079	3e3j_Y_DC109_DT110	BBB	BB01	82	0.17	BB01
080	3e3j_Y_DT110_DC111	miB	BB10	36	0.28	BB10
081	3e3j_Y_DC111_DA112	BBB	BB00	45	0.34	BB00
082	3e3j_Y_DA112_DC113	BBw	BB11	73	0.30	BB11
083	3e3j_Y_DA126_DA127	BBB	BB00	28	0.39	BB00
084	3e3j_Y_DA127_DA128	BBB	BB00	28	0.38	BB00
085	3e3j_Y_DA128_DC129	BBB	BB00	28	0.38	BB00
086	3e3j_Y_DC129_DG130	BBB	BB00	27	0.38	BB00
087	3e3j_Y_DG130_DG131	BBB	BB00	27	0.38	BB00
088	3e3j_Y_DG131_DC132	BBB	BB00	28	0.38	BB00
089	3e3j_R_G1_G2	AAA	AA00	60	0.14	AA00
090	3e3j_R_G2_G3	AAA	AA00	60	0.14	AA00
091	3e3j_R_G3_A4	AAA	AA00	60	0.14	AA00
092	3e3j_R_A4_G5	AAA	AA00	60	0.14	AA00
093	3e3j_R_G5_U6	AAA	AA00	60	0.14	AA00
094	3e3j_R_U6_A7	AAA	AA00	60	0.14	AA00
095	3e3j_R_A7_A8	AAA	AA00	60	0.14	AA00
096	3e3j_Z_G1_G2	AAA	AA00	60	0.14	AA00
097	3e3j_Z_G2_G3	AAA	AA00	60	0.14	AA00
098	3e3j_Z_G3_A4	AAA	AA00	60	0.14	AA00
099	3e3j_Z_A4_G5	AAA	AA00	60	0.14	AA00
100	3e3j_Z_G5_U6	AAA	AA00	60	0.14	AA00
101	3e3j_Z_U6_A7	AAA	AA00	60	0.14	AA00
102	3e3j_Z_A7_A8	AAA	AA00	60	0.14	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 102 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

User-based restraints

Definitions

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