Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Intact PPAR gamma - RXR alpha Nuclear Receptor Complex on DNA bound with Rosiglitazone, 9-cis Retinoic Acid and NCOA2 Peptide
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 38 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 3dzy_C_DC3001_DA3002 | BBB | BB00 | 64 | 0.35 |
| 02 | 3dzy_C_DA3002_DA3003 | BBB | BB00 | 45 | 0.34 |
| 03 | 3dzy_C_DA3003_DA3004 | BBB | BB00 | 34 | 0.33 |
| 04 | 3dzy_C_DA3004_DC3005 | NAN | NANT | 0 | 0.46 |
| 05 | 3dzy_C_DC3005_DT3006 | BBw | BB02 | 54 | 0.38 |
| 06 | 3dzy_C_DT3006_DA3007 | BBB | BB00 | 32 | 0.48 |
| 07 | 3dzy_C_DA3007_DG3008 | BBw | BB02 | 55 | 0.27 |
| 08 | 3dzy_C_DG3008_DG3009 | BBB | BB00 | 67 | 0.24 |
| 09 | 3dzy_C_DG3009_DT3010 | BBB | BB00 | 28 | 0.30 |
| 10 | 3dzy_C_DT3010_DC3011 | BBB | BB00 | 27 | 0.28 |
| 11 | 3dzy_C_DC3011_DA3012 | B12 | BB04 | 27 | 0.37 |
| 12 | 3dzy_C_DA3012_DA3013 | BBB | BB00 | 50 | 0.19 |
| 13 | 3dzy_C_DA3013_DA3014 | NAN | NANT | 0 | 0.50 |
| 14 | 3dzy_C_DA3014_DG3015 | BBB | BB00 | 40 | 0.35 |
| 15 | 3dzy_C_DG3015_DG3016 | BBw | BB02 | 53 | 0.34 |
| 16 | 3dzy_C_DG3016_DT3017 | BBB | BB00 | 55 | 0.24 |
| 17 | 3dzy_C_DT3017_DC3018 | miB | BB15 | 17 | 0.46 |
| 18 | 3dzy_C_DC3018_DA3019 | NAN | NANT | 0 | 0.53 |
| 19 | 3dzy_C_DA3019_DG3020 | BBB | BB00 | 28 | 0.38 |
| 20 | 3dzy_F_DC4001_DT4002 | BBw | BB02 | 64 | 0.26 |
| 21 | 3dzy_F_DT4002_DG4003 | BBB | BB00 | 31 | 0.39 |
| 22 | 3dzy_F_DG4003_DA4004 | BB2 | BB07 | 55 | 0.35 |
| 23 | 3dzy_F_DA4004_DC4005 | BBB | BB00 | 42 | 0.29 |
| 24 | 3dzy_F_DC4005_DC4006 | BBB | BB00 | 45 | 0.30 |
| 25 | 3dzy_F_DC4006_DT4007 | BBB | BB00 | 44 | 0.44 |
| 26 | 3dzy_F_DT4007_DT4008 | BBw | BB02 | 60 | 0.27 |
| 27 | 3dzy_F_DT4008_DT4009 | BBw | BB02 | 79 | 0.25 |
| 28 | 3dzy_F_DT4009_DG4010 | BBB | BB00 | 29 | 0.37 |
| 29 | 3dzy_F_DG4010_DA4011 | BB2 | BB07 | 26 | 0.32 |
| 30 | 3dzy_F_DA4011_DC4012 | BBB | BB00 | 52 | 0.22 |
| 31 | 3dzy_F_DC4012_DC4013 | BBB | BB00 | 51 | 0.24 |
| 32 | 3dzy_F_DC4013_DT4014 | BBB | BB00 | 52 | 0.31 |
| 33 | 3dzy_F_DT4014_DA4015 | miB | BB10 | 30 | 0.32 |
| 34 | 3dzy_F_DA4015_DG4016 | BBB | BB00 | 58 | 0.29 |
| 35 | 3dzy_F_DG4016_DT4017 | BBB | BB00 | 36 | 0.47 |
| 36 | 3dzy_F_DT4017_DT4018 | BBB | BB00 | 64 | 0.17 |
| 37 | 3dzy_F_DT4018_DT4019 | B12 | BB04 | 60 | 0.20 |
| 38 | 3dzy_F_DT4019_DG4020 | BBB | BB00 | 15 | 0.31 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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