Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal Structure of the Sarcin/Ricin Domain from E. coli 23 S rRNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 32 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 3dvz_A_U.A2647_G.A2648 | NAN | NANT | 0 | 1.15 |
| 02 | 3dvz_A_U.B2647_G.B2648 | NAN | NANT | 0 | 0.57 |
| 03 | 3dvz_A_G.A2648_C.A2649 | AAA | AA00 | 63 | 0.28 |
| 04 | 3dvz_A_G.B2648_C.B2649 | AAA | AA00 | 68 | 0.25 |
| 05 | 3dvz_A_C.A2649_U.A2650 | AAw | AA01 | 96 | 0.15 |
| 06 | 3dvz_A_C.B2649_U.B2650 | AAA | AA00 | 87 | 0.11 |
| 07 | 3dvz_A_U.A2650_C2651 | AAA | AA00 | 82 | 0.22 |
| 08 | 3dvz_A_U.B2650_C2651 | AAA | AA00 | 82 | 0.21 |
| 09 | 3dvz_A_C2651_C2652 | AAA | AA00 | 90 | 0.18 |
| 10 | 3dvz_A_C2652_U2653 | AAA | AA00 | 60 | 0.36 |
| 11 | 3dvz_A_U2653_A.A2654 | ZZZ | ZZ01 | 94 | 0.10 |
| 12 | 3dvz_A_U2653_A.B2654 | ZZZ | ZZ01 | 94 | 0.10 |
| 13 | 3dvz_A_A.A2654_G2655 | OPN | OP23 | 87 | 0.15 |
| 14 | 3dvz_A_A.B2654_G2655 | OPN | OP23 | 87 | 0.15 |
| 15 | 3dvz_A_G2655_U2656 | OPN | OP15 | 89 | 0.10 |
| 16 | 3dvz_A_U2656_A2657 | AAA | AA00 | 63 | 0.34 |
| 17 | 3dvz_A_A2657_C2658 | AAA | AA08 | 23 | 0.42 |
| 18 | 3dvz_A_C2658_G2659 | AAA | AA00 | 87 | 0.23 |
| 19 | 3dvz_A_G2659_A2660 | OPN | OP03 | 90 | 0.15 |
| 20 | 3dvz_A_A2660_G2661 | AAA | AA08 | 70 | 0.41 |
| 21 | 3dvz_A_G2661_A2662 | AAA | AA00 | 74 | 0.24 |
| 22 | 3dvz_A_A2662_G2663 | AAw | AA05 | 86 | 0.20 |
| 23 | 3dvz_A_G2663_G2664 | AAA | AA00 | 30 | 0.48 |
| 24 | 3dvz_A_G2664_A2665 | OPN | OP08 | 92 | 0.10 |
| 25 | 3dvz_A_A2665_C2666 | AAA | AA00 | 69 | 0.27 |
| 26 | 3dvz_A_C2666_C2667 | AAA | AA08 | 71 | 0.34 |
| 27 | 3dvz_A_C2667_G2668 | AAA | AA00 | 21 | 0.47 |
| 28 | 3dvz_A_G2668_G2669 | AAA | AA00 | 82 | 0.24 |
| 29 | 3dvz_A_G2669_A2670 | AAA | AA00 | 84 | 0.13 |
| 30 | 3dvz_A_A2670_G2671 | AAA | AA00 | 82 | 0.18 |
| 31 | 3dvz_A_G2671_U2672 | AAA | AA00 | 90 | 0.17 |
| 32 | 3dvz_A_U2672_G2673 | AAA | AA00 | 76 | 0.19 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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| Color by NtC (balls) |
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