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Conformers: ABBIImiBZICOPNSYNN
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Crystal structure of HIV-1 subtype F DIS extended duplex RNA bound to ribostamycin (U267OMe)

Results of the assignment of 44 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
013dvv_A_C1_U2AAAAA00760.21 AA00
023dvv_A_U2_OMU3AAAAA00940.11 AA00
033dvv_A_OMU3_G4AAAAA08880.12 AA08
043dvv_A_G4_C5AAAAA00880.15 AA00
053dvv_A_C5_U6AAAAA00960.19 AA00
063dvv_A_U6_G7AAAAA00950.12 AA00
073dvv_A_G7_A8NANNANT01.06 OP13
083dvv_A_A8_A9NANNANT01.53 AB02
093dvv_A_A9_G10NANNANT01.04 OP11
103dvv_A_G10_U11AAAAA04330.54 AA04
113dvv_A_U11_G12AAAAA00820.17 AA00
123dvv_A_G12_C13AAAAA00890.15 AA00
133dvv_A_C13_A14AAAAA00880.10 AA00
143dvv_A_A14_C15AAAAA00840.32 AA00
153dvv_A_C15_A16AAAAA00860.23 AA00
163dvv_A_A16_C17AAAAA00910.18 AA00
173dvv_A_C17_A18AAAAA00890.17 AA00
183dvv_A_A18_G19AAAAA00870.14 AA00
193dvv_A_G19_C20AAAAA00890.14 AA00
203dvv_A_C20_A21AAAAA00950.10 AA00
213dvv_A_A21_A22AAAAA00900.13 AA00
223dvv_A_A22_G23AAAAA00900.16 AA00
233dvv_B_C1_U2AAAAA00780.21 AA00
243dvv_B_U2_OMU3AAAAA00950.13 AA00
253dvv_B_OMU3_G4AAAAA00940.17 AA00
263dvv_B_G4_C5AAAAA00970.10 AA00
273dvv_B_C5_U6AAAAA00900.23 AA00
283dvv_B_U6_G7AAAAA00880.19 AA00
293dvv_B_G7_A8NANNANT01.06 OP13
303dvv_B_A8_A9AAAAA00410.38 AA00
313dvv_B_A9_G10NANNANT00.59 OP30
323dvv_B_G10_U11AAAAA00380.30 AA00
333dvv_B_U11_G12AAAAA00890.10 AA00
343dvv_B_G12_C13AAAAA00520.27 AA00
353dvv_B_C13_A14AAAAA08840.17 AA08
363dvv_B_A14_C15AAAAA00740.24 AA00
373dvv_B_C15_A16AAAAA00770.21 AA00
383dvv_B_A16_C17AAAAA00830.21 AA00
393dvv_B_C17_A18AAAAA00940.14 AA00
403dvv_B_A18_G19AAAAA00890.18 AA00
413dvv_B_G19_C20AAAAA00870.16 AA00
423dvv_B_C20_A21AAwAA01640.32 AA01
433dvv_B_A21_A22AAAAA08930.19 AA08
443dvv_B_A22_G23AAAAA08780.24 AA08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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