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Conformers: ABBIImiBZICOPNSYNN
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SgrAI with cognate DNA and calcium bound

Results of the assignment of 68 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
013dvo_E_DG1_DA2BBBBB00490.18 BB00
023dvo_E_DA2_DG3BBBBB00930.17 BB00
033dvo_E_DG3_DT4BBBBB00810.21 BB00
043dvo_E_DT4_DC5BBBBB01680.20 BB01
053dvo_E_DC5_DC6BBBBB01600.22 BB01
063dvo_E_DC6_DA7BBBBB00120.29 BB00
073dvo_E_DA7_DC8B-ABA08520.34 BA08
083dvo_E_DC8_DC9A-BAB01520.30 AB01
093dvo_E_DC9_DG10BB2BB07750.28 BB07
103dvo_E_DG10_DG11B12BB04890.23 BB04
113dvo_E_DG11_DT12B-ABA10870.26 BA10
123dvo_E_DT12_DG13NANNANT00.60 IC06
133dvo_E_DG13_DG14BBBBB00370.37 BB00
143dvo_E_DG14_DA15B12BB04830.20 BB04
153dvo_E_DA15_DC16B-ABA05630.29 BA05
163dvo_E_DC16_DT17AAAAA02340.58 AA02
173dvo_E_DT17_DC18NANNANT00.37 BA10
183dvo_F_DG1_DA2BBBBB00560.28 BB00
193dvo_F_DA2_DG3B12BB04870.24 BB04
203dvo_F_DG3_DT4BBBBB00440.25 BB00
213dvo_F_DT4_DC5BBBBB01840.16 BB01
223dvo_F_DC5_DC6BBBBB01740.19 BB01
233dvo_F_DC6_DA7BBBBB00540.32 BB00
243dvo_F_DA7_DC8B-ABA08510.35 BA08
253dvo_F_DC8_DC9A-BAB05670.20 AB05
263dvo_F_DC9_DG10BB2BB07650.30 BB07
273dvo_F_DG10_DG11B12BB04560.22 BB04
283dvo_F_DG11_DT12B-ABA10920.26 BA10
293dvo_F_DT12_DG13NANNANT00.60 IC06
303dvo_F_DG13_DG14BBBBB00580.25 BB00
313dvo_F_DG14_DA15BBBBB00570.38 BB00
323dvo_F_DA15_DC16B-ABA05840.22 BA05
333dvo_F_DC16_DT17AAAAA02500.61 AA02
343dvo_F_DT17_DC18AAAAA00320.51 AA00
353dvo_G_DG1_DA2BBBBB00690.19 BB00
363dvo_G_DA2_DG3BBBBB00820.29 BB00
373dvo_G_DG3_DT4B-ABA01560.18 BA01
383dvo_G_DT4_DC5BBBBB01470.26 BB01
393dvo_G_DC5_DC6BBBBB01640.18 BB01
403dvo_G_DC6_DA7BBBBB00280.33 BB00
413dvo_G_DA7_DC8B-ABA08780.28 BA08
423dvo_G_DC8_DC9A-BAB05160.21 AB05
433dvo_G_DC9_DG10BB2BB07520.30 BB07
443dvo_G_DG10_DG11BB2BB07610.31 BB07
453dvo_G_DG11_DT12B-ABA10710.25 BA10
463dvo_G_DT12_DG13NANNANT00.59 IC06
473dvo_G_DG13_DG14BBBBB00520.31 BB00
483dvo_G_DG14_DA15B12BB04830.17 BB04
493dvo_G_DA15_DC16BBBBB00760.17 BB00
503dvo_G_DC16_DT17BBBBB01140.19 BB01
513dvo_G_DT17_DC18AAAAA02150.49 AA02
523dvo_H_DG1_DA2BBBBB00280.22 BB00
533dvo_H_DA2_DG3miBBB10650.36 BB10
543dvo_H_DG3_DT4BBBBB01360.25 BB01
553dvo_H_DT4_DC5BBBBB01740.23 BB01
563dvo_H_DC5_DC6BBBBB01450.29 BB01
573dvo_H_DC6_DA7BBBBB00330.30 BB00
583dvo_H_DA7_DC8B-ABA01200.39 BA01
593dvo_H_DC8_DC9A-BAB01680.26 AB01
603dvo_H_DC9_DG10BB2BB07730.33 BB07
613dvo_H_DG10_DG11BBBBB00630.36 BB00
623dvo_H_DG11_DT12B-ABA10690.25 BA10
633dvo_H_DT12_DG13NANNANT00.61 IC06
643dvo_H_DG13_DG14BBBBB00580.28 BB00
653dvo_H_DG14_DA15BBBBB00670.37 BB00
663dvo_H_DA15_DC16BBBBB01640.23 BB01
673dvo_H_DC16_DT17B-ABA05580.18 BA05
683dvo_H_DT17_DC18AAAAA02300.54 AA02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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