Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
X-ray structure of a NF-kB p52/RelB/DNA complex
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 29 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 3do7_C_DC2_DG3 | OPN | OP22 | 78 | 0.36 |
| 02 | 3do7_C_DG3_DG4 | BBB | BB00 | 82 | 0.22 |
| 03 | 3do7_C_DG4_DG5 | BBB | BB00 | 67 | 0.24 |
| 04 | 3do7_C_DG5_DA6 | BB2 | BB07 | 74 | 0.26 |
| 05 | 3do7_C_DA6_DA7 | BBB | BB00 | 80 | 0.17 |
| 06 | 3do7_C_DA7_DT8 | BBw | BB02 | 93 | 0.12 |
| 07 | 3do7_C_DT8_DT9 | BBw | BB02 | 82 | 0.17 |
| 08 | 3do7_C_DT9_DC10 | BBB | BB00 | 74 | 0.26 |
| 09 | 3do7_C_DC10_DC11 | BBw | BB02 | 50 | 0.26 |
| 10 | 3do7_D_DC13_DG14 | BBB | BB00 | 65 | 0.30 |
| 11 | 3do7_D_DG14_DG15 | BBB | BB00 | 75 | 0.28 |
| 12 | 3do7_D_DG15_DG16 | BBB | BB00 | 66 | 0.34 |
| 13 | 3do7_D_DG16_DA17 | BBB | BB00 | 82 | 0.16 |
| 14 | 3do7_D_DA17_DA18 | B12 | BB04 | 83 | 0.18 |
| 15 | 3do7_D_DA18_DT19 | BBB | BB00 | 86 | 0.23 |
| 16 | 3do7_D_DT19_DT20 | BBB | BB00 | 83 | 0.19 |
| 17 | 3do7_D_DT20_DC21 | BBw | BB02 | 76 | 0.22 |
| 18 | 3do7_D_DC21_DC22 | BBB | BB00 | 79 | 0.19 |
| 19 | 3do7_D_DC22_DC23 | miB | BB13 | 30 | 0.27 |
| 20 | 3do7_E_DC2_DG3 | NAN | NANT | 0 | 1.66 |
| 21 | 3do7_E_DG3_DG4 | AAA | AA04 | 14 | 0.53 |
| 22 | 3do7_E_DG4_DG5 | AAw | AA01 | 17 | 0.38 |
| 23 | 3do7_E_DG5_DA6 | AAA | AA00 | 69 | 0.36 |
| 24 | 3do7_E_DA6_DA7 | AAA | AA00 | 32 | 0.44 |
| 25 | 3do7_E_DA7_DT8 | AAA | AA00 | 9 | 0.46 |
| 26 | 3do7_E_DT8_DT9 | AAA | AA00 | 30 | 0.46 |
| 27 | 3do7_E_DT9_DC10 | AAA | AA02 | 5 | 0.60 |
| 28 | 3do7_E_DC10_DC11 | AAA | AA02 | 19 | 0.52 |
| 29 | 3do7_E_DC11_DC12 | NAN | NANT | 0 | 0.51 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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