DNATCO v4.1: results

Crystallization of the Thermotoga maritima lysine riboswitch bound to lysine, K+ anomalous data

Results of the assignment of 173 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	3dix_A_G1_G2	AAA	AA04	75	0.27	AA04
002	3dix_A_G2_C3	AAA	AA08	85	0.12	AA08
003	3dix_A_C3_C4	AAA	AA00	95	0.14	AA00
004	3dix_A_C4_G5	AAA	AA00	91	0.17	AA00
005	3dix_A_G5_A6	AAA	AA00	87	0.15	AA00
006	3dix_A_A6_C7	AAA	AA00	81	0.16	AA00
007	3dix_A_C7_G8	AAA	AA00	62	0.27	AA00
008	3dix_A_G8_G9	AAw	AA01	93	0.13	AA01
009	3dix_A_G9_A10	AAA	AA00	39	0.31	AA00
010	3dix_A_A10_G11	NAN	NANT	0	0.62	AA01
011	3dix_A_G11_G12	NAN	NANT	0	0.90	OPS1
012	3dix_A_G12_C13	NAN	NANT	0	0.59	OP14
013	3dix_A_C13_G14	NAN	NANT	0	0.41	OP13
014	3dix_A_G14_C15	AAA	AA00	39	0.23	AA00
015	3dix_A_C15_G16	AAA	AA00	48	0.18	AA00
016	3dix_A_G16_C17	AAA	AA00	86	0.13	AA00
017	3dix_A_C17_C18	AAA	AA00	92	0.12	AA00
018	3dix_A_C18_C19	AAA	AA00	87	0.19	AA00
019	3dix_A_C19_G20	AAA	AA08	62	0.36	AA08
020	3dix_A_G20_A21	AAu	AA07	80	0.22	AA07
021	3dix_A_A21_G22	AAA	AA04	28	0.58	AA04
022	3dix_A_G22_A23	AAA	AA00	92	0.15	AA00
023	3dix_A_A23_U24	AAA	AA08	79	0.24	AA08
024	3dix_A_U24_G25	AAA	AA08	51	0.43	AA08
025	3dix_A_G25_A26	ZZZ	ZZ01	48	0.28	ZZ01
026	3dix_A_A26_G27	OPN	OP23	32	0.20	OP23
027	3dix_A_G27_U28	OPN	OP15	63	0.13	OP15
028	3dix_A_U28_A29	AAA	AA00	68	0.18	AA00
029	3dix_A_A29_G30	AAA	AA00	26	0.45	AA00
030	3dix_A_G30_G31	AAA	AA00	64	0.23	AA00
031	3dix_A_G31_C32	AAA	AA00	87	0.13	AA00
032	3dix_A_C32_U33	AAA	AA00	55	0.36	AA00
033	3dix_A_U33_G34	AAu	AA12	72	0.24	AA12
034	3dix_A_G34_U35	AAA	AA00	90	0.13	AA00
035	3dix_A_U35_C36	AAA	AA00	61	0.23	AA00
036	3dix_A_C36_C37	AAA	AA00	87	0.26	AA00
037	3dix_A_C37_C38	AAA	AA00	84	0.27	AA00
038	3dix_A_C38_A39	A-B	AB05	16	0.56	AB05
039	3dix_A_A39_U40	OPN	OP22	24	0.41	OP22
040	3dix_A_U40_C41	NAN	NANT	0	1.17	ZZ1S
041	3dix_A_C41_A42	NAN	NANT	0	0.78	OPS1
042	3dix_A_A42_G43	NAN	NANT	0	1.60	OP22
043	3dix_A_G43_G44	NAN	NANT	0	1.01	OP04
044	3dix_A_G44_G45	AAu	AA12	43	0.41	AA12
045	3dix_A_G45_G46	AAA	AA04	81	0.22	AA04
046	3dix_A_G46_A47	AAA	AA00	47	0.22	AA00
047	3dix_A_A47_G48	AAA	AA00	93	0.13	AA00
048	3dix_A_G48_G49	AAw	AA01	78	0.17	AA01
049	3dix_A_G49_A50	AAA	AA00	68	0.18	AA00
050	3dix_A_A50_A51	AAA	AA00	65	0.30	AA00
051	3dix_A_A51_U52	A-B	AB04	60	0.40	AB04
052	3dix_A_U52_C53	NAN	NANT	0	1.89	OP14
053	3dix_A_C53_G54	OPN	OP11	60	0.47	OP11
054	3dix_A_G54_G55	AAA	AA00	61	0.26	AA00
055	3dix_A_G55_G56	AAA	AA08	78	0.24	AA08
056	3dix_A_G56_G57	AAA	AA00	79	0.21	AA00
057	3dix_A_G57_A58	AAA	AA00	76	0.20	AA00
058	3dix_A_A58_C59	AAA	AA00	78	0.17	AA00
059	3dix_A_C59_G60	AAw	AA10	59	0.22	AA10
060	3dix_A_G60_G61	AAA	AA00	16	0.38	AA00
061	3dix_A_G61_C62	AAA	AA00	85	0.14	AA00
062	3dix_A_C62_U63	AAA	AA00	54	0.35	AA00
063	3dix_A_U63_G64	AAA	AA00	19	0.39	AA00
064	3dix_A_G64_A65	OPN	OP08	88	0.08	OP08
065	3dix_A_A65_A66	AAA	AA08	76	0.24	AA08
066	3dix_A_A66_A67	AAA	AA00	89	0.16	AA00
067	3dix_A_A67_G68	AAA	AA00	51	0.25	AA00
068	3dix_A_G68_G69	AAA	AA08	66	0.32	AA08
069	3dix_A_G69_C70	AAA	AA04	75	0.39	AA04
070	3dix_A_C70_G71	AAA	AA00	16	0.50	AA00
071	3dix_A_G71_A72	NAN	NANT	0	0.44	AA07
072	3dix_A_A72_G73	NAN	NANT	0	0.73	AA11
073	3dix_A_G73_G74	AAA	AA00	64	0.17	AA00
074	3dix_A_G74_G75	AAA	AA00	70	0.17	AA00
075	3dix_A_G75_C76	AAA	AA00	67	0.18	AA00
076	3dix_A_C76_G77	AAA	AA00	81	0.14	AA00
077	3dix_A_G77_C78	AAw	AA06	70	0.45	AA06
078	3dix_A_C78_C79	A-B	AB04	91	0.21	AB04
079	3dix_A_C79_G80	NAN	NANT	0	1.97	OP19
080	3dix_A_G80_A81	NAN	NANT	0	1.13	BA16
081	3dix_A_A81_A82	AAw	AA05	20	0.74	AA05
082	3dix_A_A82_G83	AAA	AA00	94	0.07	AA00
083	3dix_A_G83_G84	AAA	AA08	76	0.18	AA08
084	3dix_A_G84_G85	AAA	AA00	71	0.20	AA00
085	3dix_A_G85_U86	AAA	AA08	92	0.14	AA08
086	3dix_A_U86_G87	AAA	AA00	78	0.09	AA00
087	3dix_A_G87_C88	AAA	AA00	87	0.17	AA00
088	3dix_A_C88_A89	AAA	AA00	90	0.21	AA00
089	3dix_A_A89_G90	AAA	AA04	86	0.22	AA04
090	3dix_A_G90_A91	AAA	AA00	80	0.09	AA00
091	3dix_A_A91_G92	AAA	AA00	92	0.13	AA00
092	3dix_A_G92_U93	AAA	AA00	55	0.24	AA00
093	3dix_A_U93_U94	NAN	NANT	0	0.68	IC02
094	3dix_A_U94_C95	NAN	NANT	0	0.80	OP04
095	3dix_A_C95_C96	AAA	AA00	59	0.25	AA00
096	3dix_A_C96_U97	AAA	AA00	93	0.15	AA00
097	3dix_A_U97_C98	AAA	AA00	73	0.22	AA00
098	3dix_A_C98_C99	AAA	AA00	78	0.16	AA00
099	3dix_A_C99_C100	AAA	AA00	77	0.21	AA00
100	3dix_A_C100_G101	AAA	AA00	85	0.20	AA00
101	3dix_A_G101_C102	AAA	AA08	92	0.13	AA08
102	3dix_A_C102_U103	AAA	AA00	86	0.17	AA00
103	3dix_A_U103_C104	AAA	AA00	85	0.13	AA00
104	3dix_A_C104_U105	AAA	AA00	83	0.14	AA00
105	3dix_A_U105_G106	AAA	AA00	72	0.13	AA00
106	3dix_A_G106_C107	AAA	AA00	85	0.12	AA00
107	3dix_A_C107_A108	AAA	AA00	83	0.14	AA00
108	3dix_A_A108_U109	AAA	AA08	59	0.16	AA08
109	3dix_A_U109_G110	NAN	NANT	0	1.10	OP17
110	3dix_A_G110_C111	NAN	NANT	0	1.63	OP29
111	3dix_A_C111_C112	AAA	AA00	90	0.18	AA00
112	3dix_A_C112_U113	AAA	AA00	77	0.23	AA00
113	3dix_A_U113_G114	NAN	NANT	0	0.55	OP29
114	3dix_A_G114_G115	AAA	AA00	73	0.24	AA00
115	3dix_A_G115_G116	AAA	AA00	65	0.24	AA00
116	3dix_A_G116_G117	AAA	AA00	66	0.27	AA00
117	3dix_A_G117_G118	AAA	AA00	70	0.10	AA00
118	3dix_A_G118_U119	AAA	AA00	85	0.17	AA00
119	3dix_A_U119_A120	AAA	AA00	95	0.11	AA00
120	3dix_A_A120_U121	AAA	AA08	83	0.18	AA08
121	3dix_A_U121_G122	AAA	AA08	74	0.16	AA08
122	3dix_A_G122_G123	AAA	AA00	57	0.26	AA00
123	3dix_A_G123_G124	AAA	AA00	74	0.18	AA00
124	3dix_A_G124_G125	AAA	AA00	30	0.42	AA00
125	3dix_A_G125_A126	OPN	OP03	34	0.44	OP03
126	3dix_A_A126_A127	AAA	AA00	68	0.34	AA00
127	3dix_A_A127_U128	NAN	NANT	0	1.14	AA06
128	3dix_A_U128_A129	NAN	NANT	0	0.65	AAS1
129	3dix_A_A129_C130	AAA	AA08	51	0.50	AA08
130	3dix_A_C130_C131	AAA	AA00	92	0.13	AA00
131	3dix_A_C131_C132	AAA	AA00	91	0.23	AA00
132	3dix_A_C132_A133	AAA	AA00	86	0.16	AA00
133	3dix_A_A133_U134	AAA	AA00	91	0.11	AA00
134	3dix_A_U134_A135	AAA	AA00	75	0.10	AA00
135	3dix_A_A135_C136	AAA	AA00	96	0.09	AA00
136	3dix_A_C136_C137	AAA	AA00	93	0.10	AA00
137	3dix_A_C137_A138	AAw	AA11	90	0.18	AA11
138	3dix_A_A138_C139	AAA	AA00	68	0.30	AA00
139	3dix_A_C139_U140	AAA	AA00	77	0.25	AA00
140	3dix_A_U140_G141	AAA	AA08	82	0.27	AA08
141	3dix_A_G141_U142	AAA	AA00	87	0.18	AA00
142	3dix_A_U142_C143	AAA	AA08	56	0.38	AA08
143	3dix_A_C143_A144	AAA	AA00	96	0.12	AA00
144	3dix_A_A144_C145	AAA	AA00	94	0.09	AA00
145	3dix_A_C145_G146	AAA	AA00	82	0.15	AA00
146	3dix_A_G146_G147	AAA	AA00	78	0.19	AA00
147	3dix_A_G147_A148	AAA	AA00	66	0.25	AA00
148	3dix_A_A148_G149	AAA	AA00	74	0.16	AA00
149	3dix_A_G149_G150	AAA	AA04	78	0.34	AA04
150	3dix_A_G150_U151	A-B	AB05	80	0.23	AB05
151	3dix_A_U151_C152	NAN	NANT	0	0.98	OP24
152	3dix_A_C152_U153	NAN	NANT	0	1.21	BB04
153	3dix_A_U153_C154	NAN	NANT	0	0.81	BA17
154	3dix_A_C154_U155	AAA	AA00	90	0.17	AA00
155	3dix_A_U155_C156	AAA	AA00	75	0.19	AA00
156	3dix_A_C156_C157	AAA	AA00	58	0.27	AA00
157	3dix_A_C157_G158	AAA	AA00	75	0.16	AA00
158	3dix_A_G158_U159	AAA	AA00	84	0.20	AA00
159	3dix_A_U159_G160	AAA	AA00	72	0.20	AA00
160	3dix_A_G160_G161	AAA	AA00	64	0.18	AA00
161	3dix_A_G161_A162	A-B	AB05	56	0.34	AB05
162	3dix_A_A162_G163	NAN	NANT	0	1.05	BB02
163	3dix_A_G163_A164	NAN	NANT	0	0.65	OP21
164	3dix_A_A164_G165	OPN	OP11	76	0.27	OP11
165	3dix_A_G165_C166	AAA	AA08	88	0.15	AA08
166	3dix_A_C166_C167	AAA	AA00	86	0.19	AA00
167	3dix_A_C167_G168	AAA	AA08	47	0.25	AA08
168	3dix_A_G168_U169	AAA	AA00	68	0.26	AA00
169	3dix_A_U169_C170	AAw	AA01	80	0.14	AA01
170	3dix_A_C170_G171	AAA	AA00	75	0.17	AA00
171	3dix_A_G171_G172	AAA	AA00	82	0.11	AA00
172	3dix_A_G172_U173	AAA	AA08	64	0.22	AA08
173	3dix_A_U173_CCC174	NAN	NANT	0	0.45	AA10

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

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A-B

B-A

B

IC

Z

N

Results of the assignment of 173 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

User-based restraints

Definitions

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