DNATCO v4.1: results

Crystallization of the Thermotoga maritima lysine riboswitch in free form

Results of the assignment of 173 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	3dis_A_G1_G2	AAA	AA00	58	0.25	AA00
002	3dis_A_G2_C3	AAA	AA00	74	0.18	AA00
003	3dis_A_C3_C4	AAA	AA00	86	0.16	AA00
004	3dis_A_C4_G5	AAA	AA08	85	0.11	AA08
005	3dis_A_G5_A6	AAA	AA00	71	0.19	AA00
006	3dis_A_A6_C7	AAA	AA00	65	0.19	AA00
007	3dis_A_C7_G8	AAA	AA00	67	0.26	AA00
008	3dis_A_G8_G9	NAN	NANT	0	0.22	AA10
009	3dis_A_G9_A10	AAA	AA00	13	0.41	AA00
010	3dis_A_A10_G11	NAN	NANT	0	0.53	AB2S
011	3dis_A_G11_G12	NAN	NANT	0	0.84	OPS1
012	3dis_A_G12_C13	NAN	NANT	0	0.71	OP14
013	3dis_A_C13_G14	NAN	NANT	0	0.47	OP13
014	3dis_A_G14_C15	AAA	AA00	67	0.24	AA00
015	3dis_A_C15_G16	AAA	AA00	79	0.15	AA00
016	3dis_A_G16_C17	AAA	AA00	80	0.19	AA00
017	3dis_A_C17_C18	AAA	AA00	68	0.20	AA00
018	3dis_A_C18_C19	AAA	AA00	79	0.19	AA00
019	3dis_A_C19_G20	AAA	AA08	60	0.34	AA08
020	3dis_A_G20_A21	AAu	AA07	79	0.21	AA07
021	3dis_A_A21_G22	AAA	AA08	24	0.62	AA08
022	3dis_A_G22_A23	AAA	AA00	50	0.23	AA00
023	3dis_A_A23_U24	AAA	AA00	78	0.22	AA00
024	3dis_A_U24_G25	AAA	AA08	40	0.47	AA08
025	3dis_A_G25_A26	ZZZ	ZZ01	14	0.37	ZZ01
026	3dis_A_A26_G27	NAN	NANT	0	0.25	OP23
027	3dis_A_G27_U28	OPN	OP15	14	0.20	OP15
028	3dis_A_U28_A29	AAA	AA00	74	0.17	AA00
029	3dis_A_A29_G30	AAA	AA00	48	0.44	AA00
030	3dis_A_G30_G31	AAA	AA00	81	0.17	AA00
031	3dis_A_G31_C32	AAA	AA00	55	0.27	AA00
032	3dis_A_C32_U33	AAA	AA00	40	0.44	AA00
033	3dis_A_U33_G34	AAu	AA12	44	0.23	AA12
034	3dis_A_G34_U35	NAN	NANT	0	0.55	AA10
035	3dis_A_U35_C36	AAA	AA08	79	0.42	AA08
036	3dis_A_C36_C37	AAA	AA08	56	0.33	AA08
037	3dis_A_C37_C38	AAA	AA00	63	0.30	AA00
038	3dis_A_C38_A39	NAN	NANT	0	0.73	BB10
039	3dis_A_A39_U40	NAN	NANT	0	0.49	OP22
040	3dis_A_U40_C41	NAN	NANT	0	1.15	ZZ1S
041	3dis_A_C41_A42	NAN	NANT	0	0.80	OPS1
042	3dis_A_A42_G43	NAN	NANT	0	1.65	OP22
043	3dis_A_G43_G44	NAN	NANT	0	0.95	OP04
044	3dis_A_G44_G45	AAu	AA12	38	0.47	AA12
045	3dis_A_G45_G46	AAA	AA08	58	0.17	AA08
046	3dis_A_G46_A47	AAA	AA00	52	0.26	AA00
047	3dis_A_A47_G48	AAA	AA08	67	0.23	AA08
048	3dis_A_G48_G49	AAw	AA01	54	0.27	AA01
049	3dis_A_G49_A50	AAA	AA03	28	0.31	AA03
050	3dis_A_A50_A51	AAA	AA00	60	0.30	AA00
051	3dis_A_A51_U52	A-B	AB04	41	0.41	AB04
052	3dis_A_U52_C53	NAN	NANT	0	1.83	OP14
053	3dis_A_C53_G54	OPN	OP11	52	0.42	OP11
054	3dis_A_G54_G55	AAA	AA00	57	0.31	AA00
055	3dis_A_G55_G56	AAA	AA08	85	0.20	AA08
056	3dis_A_G56_G57	AAA	AA00	74	0.20	AA00
057	3dis_A_G57_A58	AAA	AA00	42	0.26	AA00
058	3dis_A_A58_C59	AAA	AA08	93	0.17	AA08
059	3dis_A_C59_G60	AAw	AA10	74	0.20	AA10
060	3dis_A_G60_G61	AAA	AA00	68	0.24	AA00
061	3dis_A_G61_C62	AAA	AA00	71	0.19	AA00
062	3dis_A_C62_U63	AAA	AA04	52	0.43	AA04
063	3dis_A_U63_G64	AAA	AA08	58	0.38	AA08
064	3dis_A_G64_A65	OPN	OP08	79	0.10	OP08
065	3dis_A_A65_A66	AAA	AA00	54	0.29	AA00
066	3dis_A_A66_A67	AAA	AA00	88	0.12	AA00
067	3dis_A_A67_G68	AAA	AA00	58	0.24	AA00
068	3dis_A_G68_G69	AAA	AA00	29	0.43	AA00
069	3dis_A_G69_C70	AAA	AA04	63	0.40	AA04
070	3dis_A_C70_G71	AAA	AA08	62	0.44	AA08
071	3dis_A_G71_A72	NAN	NANT	0	0.42	AA07
072	3dis_A_A72_G73	NAN	NANT	0	0.70	AA11
073	3dis_A_G73_G74	AAA	AA04	83	0.19	AA04
074	3dis_A_G74_G75	AAA	AA08	80	0.27	AA08
075	3dis_A_G75_C76	AAA	AA00	89	0.23	AA00
076	3dis_A_C76_G77	AAA	AA00	23	0.23	AA00
077	3dis_A_G77_C78	AAw	AA10	36	0.35	AA10
078	3dis_A_C78_C79	A-B	AB04	96	0.19	AB04
079	3dis_A_C79_G80	NAN	NANT	0	1.97	OP19
080	3dis_A_G80_A81	NAN	NANT	0	1.08	OP27
081	3dis_A_A81_A82	AAw	AA05	22	0.74	AA05
082	3dis_A_A82_G83	AAA	AA00	84	0.15	AA00
083	3dis_A_G83_G84	AAA	AA00	49	0.20	AA00
084	3dis_A_G84_G85	AAA	AA00	72	0.16	AA00
085	3dis_A_G85_U86	AAA	AA00	65	0.30	AA00
086	3dis_A_U86_G87	AAA	AA08	85	0.21	AA08
087	3dis_A_G87_C88	AAA	AA00	86	0.19	AA00
088	3dis_A_C88_A89	AAA	AA00	61	0.25	AA00
089	3dis_A_A89_G90	AAA	AA08	49	0.26	AA08
090	3dis_A_G90_A91	AAA	AA08	83	0.20	AA08
091	3dis_A_A91_G92	AAA	AA00	93	0.09	AA00
092	3dis_A_G92_U93	AAA	AA00	69	0.26	AA00
093	3dis_A_U93_U94	NAN	NANT	0	0.62	IC02
094	3dis_A_U94_C95	NAN	NANT	0	0.78	OP04
095	3dis_A_C95_C96	AAA	AA00	74	0.25	AA00
096	3dis_A_C96_U97	AAA	AA00	70	0.18	AA00
097	3dis_A_U97_C98	AAA	AA00	61	0.28	AA00
098	3dis_A_C98_C99	AAA	AA00	85	0.15	AA00
099	3dis_A_C99_C100	AAA	AA04	87	0.25	AA04
100	3dis_A_C100_G101	AAA	AA00	83	0.22	AA00
101	3dis_A_G101_C102	AAA	AA08	91	0.15	AA08
102	3dis_A_C102_U103	AAA	AA00	56	0.29	AA00
103	3dis_A_U103_C104	AAA	AA00	95	0.09	AA00
104	3dis_A_C104_U105	AAA	AA00	78	0.16	AA00
105	3dis_A_U105_G106	AAA	AA08	72	0.28	AA08
106	3dis_A_G106_C107	AAA	AA00	85	0.19	AA00
107	3dis_A_C107_A108	AAA	AA08	80	0.20	AA08
108	3dis_A_A108_U109	AAA	AA08	92	0.15	AA08
109	3dis_A_U109_G110	NAN	NANT	0	1.19	OP17
110	3dis_A_G110_C111	NAN	NANT	0	1.80	OP29
111	3dis_A_C111_C112	AAA	AA00	70	0.23	AA00
112	3dis_A_C112_U113	AAA	AA00	84	0.19	AA00
113	3dis_A_U113_G114	OPN	OP29	49	0.53	OP29
114	3dis_A_G114_G115	AAA	AA00	58	0.25	AA00
115	3dis_A_G115_G116	AAA	AA00	83	0.13	AA00
116	3dis_A_G116_G117	AAA	AA04	96	0.22	AA04
117	3dis_A_G117_G118	AAA	AA00	81	0.11	AA00
118	3dis_A_G118_U119	AAA	AA08	83	0.17	AA08
119	3dis_A_U119_A120	AAA	AA00	79	0.21	AA00
120	3dis_A_A120_U121	AAA	AA00	70	0.20	AA00
121	3dis_A_U121_G122	AAA	AA00	74	0.21	AA00
122	3dis_A_G122_G123	AAA	AA00	67	0.20	AA00
123	3dis_A_G123_G124	AAA	AA00	65	0.21	AA00
124	3dis_A_G124_G125	AAA	AA00	12	0.47	AA00
125	3dis_A_G125_A126	NAN	NANT	0	0.28	OP04
126	3dis_A_A126_A127	AAA	AA08	71	0.24	AA08
127	3dis_A_A127_U128	NAN	NANT	0	1.38	AB2S
128	3dis_A_U128_A129	NAN	NANT	0	0.59	AAS1
129	3dis_A_A129_C130	AAA	AA08	27	0.57	AA08
130	3dis_A_C130_C131	AAA	AA00	70	0.15	AA00
131	3dis_A_C131_C132	AAA	AA00	80	0.25	AA00
132	3dis_A_C132_A133	AAA	AA00	66	0.18	AA00
133	3dis_A_A133_U134	AAA	AA08	93	0.12	AA08
134	3dis_A_U134_A135	AAA	AA00	96	0.10	AA00
135	3dis_A_A135_C136	AAA	AA00	86	0.13	AA00
136	3dis_A_C136_C137	AAA	AA00	76	0.18	AA00
137	3dis_A_C137_A138	AAw	AA11	67	0.20	AA11
138	3dis_A_A138_C139	AAA	AA00	51	0.35	AA00
139	3dis_A_C139_U140	AAA	AA00	86	0.26	AA00
140	3dis_A_U140_G141	AAA	AA08	84	0.27	AA08
141	3dis_A_G141_U142	AAA	AA00	80	0.19	AA00
142	3dis_A_U142_C143	AAA	AA08	36	0.40	AA08
143	3dis_A_C143_A144	AAA	AA00	90	0.14	AA00
144	3dis_A_A144_C145	AAA	AA00	95	0.06	AA00
145	3dis_A_C145_G146	AAA	AA00	63	0.19	AA00
146	3dis_A_G146_G147	AAA	AA04	81	0.31	AA04
147	3dis_A_G147_A148	AAA	AA00	64	0.27	AA00
148	3dis_A_A148_G149	AAA	AA08	76	0.18	AA08
149	3dis_A_G149_G150	AAA	AA00	21	0.40	AA00
150	3dis_A_G150_U151	A-B	AB01	24	0.43	AB01
151	3dis_A_U151_C152	NAN	NANT	0	1.31	OP26
152	3dis_A_C152_U153	NAN	NANT	0	1.42	BB07
153	3dis_A_U153_C154	NAN	NANT	0	0.75	BA17
154	3dis_A_C154_U155	AAA	AA00	70	0.18	AA00
155	3dis_A_U155_C156	AAA	AA08	46	0.26	AA08
156	3dis_A_C156_C157	AAA	AA00	13	0.38	AA00
157	3dis_A_C157_G158	AAA	AA08	60	0.23	AA08
158	3dis_A_G158_U159	AAA	AA00	55	0.25	AA00
159	3dis_A_U159_G160	AAA	AA00	78	0.15	AA00
160	3dis_A_G160_G161	AAA	AA00	56	0.23	AA00
161	3dis_A_G161_A162	A-B	AB05	44	0.34	AB05
162	3dis_A_A162_G163	NAN	NANT	0	1.07	IC03
163	3dis_A_G163_A164	NAN	NANT	0	0.75	OP21
164	3dis_A_A164_G165	NAN	NANT	0	0.29	OP11
165	3dis_A_G165_C166	AAA	AA08	87	0.17	AA08
166	3dis_A_C166_C167	AAA	AA00	59	0.22	AA00
167	3dis_A_C167_G168	AAA	AA08	59	0.26	AA08
168	3dis_A_G168_U169	AAA	AA00	51	0.31	AA00
169	3dis_A_U169_C170	AAw	AA01	87	0.16	AA01
170	3dis_A_C170_G171	AAA	AA00	68	0.17	AA00
171	3dis_A_G171_G172	AAA	AA00	86	0.14	AA00
172	3dis_A_G172_U173	AAA	AA08	76	0.27	AA08
173	3dis_A_U173_CCC174	NAN	NANT	0	0.50	AA10

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 173 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

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Definitions

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