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Conformers: ABBIImiBZICOPNSYNN
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E. coli Initiator tRNA

Results of the assignment of 74 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
013cw5_A_C1_G2NANNANT00.79 OP17
023cw5_A_G2_C3NANNANT00.35 AA01
033cw5_A_C3_G4NANNANT00.35 AA10
043cw5_A_G4_G5AAAAA00600.27 AA00
053cw5_A_G5_G6AAAAA04660.24 AA04
063cw5_A_G6_G7A-BAB04240.43 AB04
073cw5_A_G7_4SU8NANNANT00.80 OP12
083cw5_A_4SU8_G9NANNANT01.52 IC03
093cw5_A_G9_G10NANNANT00.91 OP12
103cw5_A_G10_A11AAAAA00360.27 AA00
113cw5_A_A11_G12AAAAA00700.20 AA00
123cw5_A_G12_C13NANNANT00.26 AA10
133cw5_A_C13_A14NANNANT00.51 AA01
143cw5_A_A14_G15AAAAA0090.62 AA00
153cw5_A_G15_C16A-BAB04250.49 AB04
163cw5_A_C16_C17NANNANT01.17 IC06
173cw5_A_C17_U17.ANANNANT00.66 ZZS2
183cw5_A_U17.A_G18NANNANT01.22 OP11
193cw5_A_G18_G19NANNANT00.50 IC06
203cw5_A_G19_H2U20NANNANT01.49 OP23
213cw5_A_H2U20_A21NANNANT01.59 OP21
223cw5_A_A21_G22NANNANT00.97 BB11
233cw5_A_G22_C23AAAAA00710.19 AA00
243cw5_A_C23_U24AAAAA00570.26 AA00
253cw5_A_U24_C25AAwAA01470.16 AA01
263cw5_A_C25_G26AAAAA08680.39 AA08
273cw5_A_G26_U27AAAAA08470.21 AA08
283cw5_A_U27_C28AAAAA00740.14 AA00
293cw5_A_C28_G29AAAAA00690.16 AA00
303cw5_A_G29_G30AAAAA04750.22 AA04
313cw5_A_G30_G31AAAAA0390.24 AA03
323cw5_A_G31_OMC32AAAAA00670.29 AA00
333cw5_A_OMC32_U33AAwAA05320.48 AA05
343cw5_A_U33_C34NANNANT00.41 OP04
353cw5_A_C34_A35AAAAA00360.40 AA00
363cw5_A_A35_U36NANNANT00.52 AA10
373cw5_A_U36_A37NANNANT01.93 OP09
383cw5_A_A37_A38NANNANT01.22 OP19
393cw5_A_A38_C39AAAAA08140.48 AA08
403cw5_A_C39_C40AAAAA00870.19 AA00
413cw5_A_C40_C41AAAAA00880.18 AA00
423cw5_A_C41_G42AAAAA00480.25 AA00
433cw5_A_G42_A43AAAAA08600.25 AA08
443cw5_A_A43_A44AAAAA00600.16 AA00
453cw5_A_A44_G45AAAAA08500.35 AA08
463cw5_A_G45_A46NANNANT00.77 AA13
473cw5_A_A46_U47NANNANT01.15 OP13
483cw5_A_U47_C48NANNANT00.93 OP06
493cw5_A_C48_G49NANNANT01.47 OP06
503cw5_A_G49_U50AAAAA00290.27 AA00
513cw5_A_U50_C51AAAAA00960.10 AA00
523cw5_A_C51_G52AAwAA10680.24 AA10
533cw5_A_G52_G53AAAAA08700.23 AA08
543cw5_A_G53_5MU54AAAAA00680.19 AA00
553cw5_A_C56_A57AAAAA08700.32 AA08
563cw5_A_A57_A58ICLIC01880.33 IC01
573cw5_A_A58_A59NANNANT00.67 OP04
583cw5_A_A59_U60A-BAB04240.63 AB04
593cw5_A_U60_C61OPNOP12480.17 OP12
603cw5_A_C61_C62AAAAA00460.27 AA00
613cw5_A_C62_G63AAAAA00730.21 AA00
623cw5_A_G63_G64AAAAA08730.26 AA08
633cw5_A_G64_C65AAAAA04850.28 AA04
643cw5_A_C65_C66AAAAA00720.21 AA00
653cw5_A_C66_C67AAAAA00890.09 AA00
663cw5_A_C67_C68AAAAA00820.12 AA00
673cw5_A_C68_C69AAAAA00310.22 AA00
683cw5_A_C69_G70AAAAA08690.29 AA08
693cw5_A_G70_C71AAwAA01550.18 AA01
703cw5_A_C71_A72AAAAA08860.19 AA08
713cw5_A_A72_A73AAAAA00610.23 AA00
723cw5_A_A73_C74AAAAA04790.36 AA04
733cw5_A_C74_C75AAAAA00790.30 AA00
743cw5_A_C75_A76NANNANT00.63 ZZ01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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