Home or other PDB ID
 
 
 
 
 
 
 
 
 
Selection mode
 
 
 
 
 
 
Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structural Basis for Dimerization in DNA Recognition by Gal4

Results of the assignment of 38 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
013coq_D_DA1_DC2B-ABA05460.34 BA05
023coq_D_DC2_DC3NANNANT00.28 AB03
033coq_D_DC3_DG4BB2BB07630.34 BB07
043coq_D_DG4_DG5miBBB15350.47 BB15
053coq_D_DG5_DA6NANNANT00.59 BB10
063coq_D_DA6_DG7NANNANT00.58 BA08
073coq_D_DG7_DG8BBBBB00500.19 BB00
083coq_D_DG8_DA9B12BB04590.32 BB04
093coq_D_DA9_DC10BBBBB00680.24 BB00
103coq_D_DC10_DA11BBBBB00650.32 BB00
113coq_D_DA11_DG12BBBBB01730.20 BB01
123coq_D_DG12_DT13NANNANT00.63 BB00
133coq_D_DT13_DC14BBBBB00380.42 BB00
143coq_D_DC14_DC15B-ABA16540.23 BA16
153coq_D_DC15_DT16A-BAB01410.28 AB01
163coq_D_DT16_DC17BBBBB00820.34 BB00
173coq_D_DC17_DC18BB2BB07870.27 BB07
183coq_D_DC18_DG19BBBBB00600.36 BB00
193coq_D_DG19_DG20BB2BB07780.25 BB07
203coq_E_DT21_DC22BBBBB01530.26 BB01
213coq_E_DC22_DC23NANNANT00.54 BB11
223coq_E_DC23_DG24BB2BB07440.40 BB07
233coq_E_DG24_DG25BBBBB00680.35 BB00
243coq_E_DG25_DA26BB2BB07760.35 BB07
253coq_E_DA26_DG27BBBBB01250.22 BB01
263coq_E_DG27_DG28BBBBB00790.32 BB00
273coq_E_DG28_DA29BB2BB07330.32 BB07
283coq_E_DA29_DC30BBBBB00360.31 BB00
293coq_E_DC30_DT31B12BB04770.20 BB04
303coq_E_DT31_DG32BBBBB00670.26 BB00
313coq_E_DG32_DT33NANNANT00.65 BB00
323coq_E_DT33_DC34BBBBB00580.45 BB00
333coq_E_DC34_DC35B-ABA16760.25 BA16
343coq_E_DC35_DT36A-BAB05740.18 AB05
353coq_E_DT36_DC37BBBBB00800.37 BB00
363coq_E_DC37_DC38BB2BB07530.35 BB07
373coq_E_DC38_DG39BBBBB00130.42 BB00
383coq_E_DG39_DG40NANNANT00.54 BB14

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show




Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N