Home or other PDB ID
 
 
 
 
 
 
 
 
 
Selection mode
 
 
 
 
 
 
Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal Structure of FoxO1 DBD Bound to IRE DNA

Results of the assignment of 60 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
013coa_A_DT-4_DG-3BBBBB00590.52 BB00
023coa_A_DG-3_DG-2B12BB04690.22 BB04
033coa_A_DG-2_DT-1BBBBB00890.22 BB00
043coa_A_DT-1_DT1BBwBB02830.19 BB02
053coa_A_DT1_DT2BBBBB00460.25 BB00
063coa_A_DT2_DG3BBBBB01750.21 BB01
073coa_A_DG3_DT4BBBBB00390.34 BB00
083coa_A_DT4_DT5BBwBB02730.14 BB02
093coa_A_DT5_DT6BBBBB00860.19 BB00
103coa_A_DT6_DT7BBBBB00840.15 BB00
113coa_A_DT7_DG8BBBBB00870.20 BB00
123coa_A_DG8_DC9BBwBB02520.20 BB02
133coa_A_DC9_DT10BBBBB00630.20 BB00
143coa_A_DT10_DT11BBwBB02830.17 BB02
153coa_A_DT11_DG12BBBBB00620.24 BB00
163coa_B_DC13_DA14BBBBB00620.39 BB00
173coa_B_DA14_DA15BBBBB00920.14 BB00
183coa_B_DA15_DG16BBwBB02610.25 BB02
193coa_B_DG16_DC17BBBBB00600.32 BB00
203coa_B_DC17_DA18BBBBB00870.18 BB00
213coa_B_DA18_DA19BBBBB00840.18 BB00
223coa_B_DA19_DA20BBBBB00800.19 BB00
233coa_B_DA20_DA21B12BB04810.22 BB04
243coa_B_DA21_DC22BBwBB02870.17 BB02
253coa_B_DC22_DA23BBBBB00790.18 BB00
263coa_B_DA23_DA24B12BB04710.16 BB04
273coa_B_DA24_DA25BBBBB00970.11 BB00
283coa_B_DA25_DC26BBwBB02860.15 BB02
293coa_B_DC26_DC27BBBBB00570.36 BB00
303coa_B_DC27_DA28BB2BB07860.19 BB07
313coa_D_DT-4_DG-3B12BB04780.30 BB04
323coa_D_DG-3_DG-2B12BB04850.17 BB04
333coa_D_DG-2_DT-1BBwBB02740.23 BB02
343coa_D_DT-1_DT1BBBBB00660.21 BB00
353coa_D_DT1_DT2BBwBB02830.16 BB02
363coa_D_DT2_DG3B-ABA05640.26 BA05
373coa_D_DG3_DT4BBBBB00500.33 BB00
383coa_D_DT4_DT5BBwBB02730.16 BB02
393coa_D_DT5_DT6BBBBB00840.20 BB00
403coa_D_DT6_DT7BBBBB00880.18 BB00
413coa_D_DT7_DG8BBBBB00830.23 BB00
423coa_D_DG8_DC9BBwBB02860.16 BB02
433coa_D_DC9_DT10BBBBB00890.14 BB00
443coa_D_DT10_DT11BBwBB02960.16 BB02
453coa_D_DT11_DG12BBBBB00680.22 BB00
463coa_E_DC13_DA14BBBBB00810.31 BB00
473coa_E_DA14_DA15BBBBB00910.13 BB00
483coa_E_DA15_DG16BBwBB02140.40 BB02
493coa_E_DG16_DC17B12BB04190.21 BB04
503coa_E_DC17_DA18BBBBB00750.25 BB00
513coa_E_DA18_DA19BBBBB00790.19 BB00
523coa_E_DA19_DA20BBwBB02890.10 BB02
533coa_E_DA20_DA21BBBBB00720.34 BB00
543coa_E_DA21_DC22BBBBB00670.23 BB00
553coa_E_DC22_DA23BBBBB00780.23 BB00
563coa_E_DA23_DA24B12BB04780.16 BB04
573coa_E_DA24_DA25BBBBB00940.10 BB00
583coa_E_DA25_DC26BBwBB02930.13 BB02
593coa_E_DC26_DC27BBBBB00690.29 BB00
603coa_E_DC27_DA28BB2BB07860.19 BB07

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show




Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N