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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal Structure of FoxO1 DBD Bound to DBE2 DNA

Results of the assignment of 60 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
013co7_A_DT-2_DC-1BBBBB00640.28 BB00
023co7_A_DC-1_DT1BBwBB02540.24 BB02
033co7_A_DT1_DT2BBwBB02540.32 BB02
043co7_A_DT2_DG3NANNANT00.46 BB02
053co7_A_DG3_DT4BBwBB02720.26 BB02
063co7_A_DT4_DT5BBwBB02720.23 BB02
073co7_A_DT5_DT6BBBBB00620.21 BB00
083co7_A_DT6_DA7BBwBB02820.19 BB02
093co7_A_DA7_DC8BBwBB02520.31 BB02
103co7_A_DC8_DA9BBBBB00690.23 BB00
113co7_A_DA9_DT10BBwBB02650.24 BB02
123co7_A_DT10_DT11BBwBB02610.27 BB02
133co7_A_DT11_DT12BBwBB02560.27 BB02
143co7_A_DT12_DT13BBwBB02420.27 BB02
153co7_A_DT13_DG14BBBBB00320.30 BB00
163co7_B_DC15_DA16BBBBB00780.33 BB00
173co7_B_DA16_DA17BBBBB00600.34 BB00
183co7_B_DA17_DA18BBBBB00750.22 BB00
193co7_B_DA18_DA19BBwBB02550.27 BB02
203co7_B_DA19_DT20BBwBB02700.29 BB02
213co7_B_DT20_DG21BBBBB00760.23 BB00
223co7_B_DG21_DT22BBwBB02630.30 BB02
233co7_B_DT22_DA23miBBB15720.23 BB15
243co7_B_DA23_DA24BBwBB02640.19 BB02
253co7_B_DA24_DA25BBBBB00670.34 BB00
263co7_B_DA25_DC26BBwBB02860.20 BB02
273co7_B_DC26_DA27BBBBB00430.30 BB00
283co7_B_DA27_DA28BBBBB00640.28 BB00
293co7_B_DA28_DG29BBwBB02480.29 BB02
303co7_B_DG29_DA30BBBBB00160.35 BB00
313co7_D_DT-2_DC-1BBBBB00620.29 BB00
323co7_D_DC-1_DT1BBwBB02530.24 BB02
333co7_D_DT1_DT2BBwBB02560.31 BB02
343co7_D_DT2_DG3NANNANT00.46 BB02
353co7_D_DG3_DT4BBwBB02720.25 BB02
363co7_D_DT4_DT5BBwBB02720.23 BB02
373co7_D_DT5_DT6BBBBB00630.20 BB00
383co7_D_DT6_DA7BBwBB02820.19 BB02
393co7_D_DA7_DC8BBwBB02530.31 BB02
403co7_D_DC8_DA9BBBBB00670.23 BB00
413co7_D_DA9_DT10BBwBB02630.23 BB02
423co7_D_DT10_DT11BBwBB02610.27 BB02
433co7_D_DT11_DT12BBwBB02580.27 BB02
443co7_D_DT12_DT13BBwBB02400.27 BB02
453co7_D_DT13_DG14BBBBB00340.30 BB00
463co7_E_DC15_DA16BBBBB00790.33 BB00
473co7_E_DA16_DA17BBBBB00580.34 BB00
483co7_E_DA17_DA18BBBBB00740.22 BB00
493co7_E_DA18_DA19BBwBB02550.27 BB02
503co7_E_DA19_DT20BBwBB02710.28 BB02
513co7_E_DT20_DG21BBBBB00770.23 BB00
523co7_E_DG21_DT22BBwBB02600.30 BB02
533co7_E_DT22_DA23miBBB15710.24 BB15
543co7_E_DA23_DA24BBwBB02640.19 BB02
553co7_E_DA24_DA25BBBBB00680.34 BB00
563co7_E_DA25_DC26BBwBB02860.20 BB02
573co7_E_DC26_DA27BBBBB00440.29 BB00
583co7_E_DA27_DA28BBBBB00650.28 BB00
593co7_E_DA28_DG29BBwBB02490.29 BB02
603co7_E_DG29_DA30BBBBB00140.36 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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