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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Ternary complex of DNA POLYMERASE BETA with a G:dAPCPP mismatch in the active site

Results of the assignment of 28 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
013c2m_T_DC1_DC2A-BAB05650.23 AB05
023c2m_T_DC2_DG3BBBBB00590.32 BB00
033c2m_T_DG3_DA4B12BB04640.33 BB04
043c2m_T_DA4_DC5B-ABA05780.19 BA05
053c2m_T_DC5_DG6NANNANT01.42 OP21
063c2m_T_DG6_DG7BBBBB00660.29 BB00
073c2m_T_DG7_DC8B12BB04750.20 BB04
083c2m_T_DC8_DG9B12BB04670.27 BB04
093c2m_T_DG9_DC10B-ABA05710.20 BA05
103c2m_T_DC10_DA11BBBBB00220.27 BB00
113c2m_T_DA11_DT12BBBBB01680.23 BB01
123c2m_T_DT12_DC13BBBBB00620.26 BB00
133c2m_T_DC13_DA14BB2BB07920.23 BB07
143c2m_T_DA14_DG15BBBBB00900.12 BB00
153c2m_T_DG15_DC16B-ABA05160.32 BA05
163c2m_P_DG1_DC2BBBBB00810.17 BB00
173c2m_P_DC2_DT3BBBBB00860.21 BB00
183c2m_P_DT3_DG4BB2BB07410.25 BB07
193c2m_P_DG4_DA5BBBBB01820.11 BB01
203c2m_P_DA5_DT6B-ABA05850.20 BA05
213c2m_P_DT6_DG7BBBBB01640.30 BB01
223c2m_P_DG7_DC8B-ABA05530.13 BA05
233c2m_P_DC8_DG9BBBBB01590.28 BB01
243c2m_P_DG9_DC10BBBBB00700.20 BB00
253c2m_D_DG1_DT2BBBBB01830.22 BB01
263c2m_D_DT2_DC3BBBBB00510.23 BB00
273c2m_D_DC3_DG4B12BB04690.21 BB04
283c2m_D_DG4_DG5BBBBB00790.22 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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