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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Cre-loxP Synaptic structure

Results of the assignment of 133 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0013c29_C_DT1_DA2NANNANT00.48 BB04
0023c29_C_DA2_DT3BBBBB00710.22 BB00
0033c29_C_DT3_DA4B12BB04590.32 BB04
0043c29_C_DA4_DA5BBBBB00490.36 BB00
0053c29_C_DA5_DC6B-ABA09830.16 BA09
0063c29_C_DC6_DT7A-BAB05520.23 AB05
0073c29_C_DT7_DT8BBBBB00740.19 BB00
0083c29_C_DT8_DC9BBBBB00610.26 BB00
0093c29_C_DC9_DG10B-ABA08640.19 BA08
0103c29_C_DG10_DT11A-BAB03540.26 AB03
0113c29_C_DT11_DA12BBBBB01810.13 BB01
0123c29_C_DA12_DT13BBBBB00670.25 BB00
0133c29_C_DT13_DA14B12BB04710.23 BB04
0143c29_C_DA14_1AP15BBBBB00510.26 BB00
0153c29_C_1AP15_DT16NANNANT00.73 AB02
0163c29_C_DT16_DG17BBBBB00540.34 BB00
0173c29_C_DG17_DT18BBBBB00540.24 BB00
0183c29_C_DT18_DA19BBBBB01900.14 BB01
0193c29_C_DA19_DT20BBBBB01670.27 BB01
0203c29_C_DT20_DG21BBBBB00590.32 BB00
0213c29_C_DG21_DC22NANNANT00.67 BB12
0223c29_C_DC22_DT23BBwBB16680.57 BB16
0233c29_C_DT23_DA24B-ABA08790.27 BA08
0243c29_C_DA24_DT25A-BAB01710.27 AB01
0253c29_C_DT25_DA26BBBBB00140.44 BB00
0263c29_C_DA26_DC27BBBBB00750.28 BB00
0273c29_C_DC27_DG28BB2BB07830.19 BB07
0283c29_C_DG28_DA29BBBBB00860.12 BB00
0293c29_C_DA29_DA30B12BB04750.18 BB04
0303c29_C_DA30_DG31BBBBB00860.12 BB00
0313c29_C_DG31_DT32BBBBB00700.28 BB00
0323c29_C_DT32_DT33B12BB04360.44 BB04
0333c29_C_DT33_DA34B-ABA17730.35 BA17
0343c29_C_DA34_DT35NANNANT00.85 AB02
0353c29_D_DA2_DT3miBBB15220.34 BB15
0363c29_D_DT3_DA4BB2BB07770.20 BB07
0373c29_D_DA4_DA5BBBBB00480.38 BB00
0383c29_D_DA5_DC6B-ABA09800.17 BA09
0393c29_D_DC6_DT7A-BAB05640.25 AB05
0403c29_D_DT7_DT8BBBBB00820.14 BB00
0413c29_D_DT8_DC9B-ABA05970.14 BA05
0423c29_D_DC9_DG10A-BAB03890.28 AB03
0433c29_D_DG10_DT11BBBBB00770.27 BB00
0443c29_D_DT11_DA12B12BB04640.23 BB04
0453c29_D_DA12_DT13BBBBB00930.18 BB00
0463c29_D_DT13_DA14B12BB04720.22 BB04
0473c29_D_DA14_DG15BBBBB00870.16 BB00
0483c29_D_DG15_DC16NANNANT00.56 BA09
0493c29_D_DC16_DA17AAAAA00850.34 AA00
0503c29_D_DA17_DT18NANNANT00.47 AB04
0513c29_D_DT18_DA19BBBBB00130.34 BB00
0523c29_D_DA19_DC20B-ABA05860.25 BA05
0533c29_D_DC20_DA21BBBBB00150.40 BB00
0543c29_D_DA21_DT22B-ABA09880.25 BA09
0553c29_D_DT22_DT23A-BAB01220.56 AB01
0563c29_D_DT23_DA24NANNANT00.39 BA08
0573c29_D_DA24_DT25A-BAB05260.29 AB05
0583c29_D_DT25_DA26BBBBB00100.55 BB00
0593c29_D_DA26_DC27BBBBB00750.28 BB00
0603c29_D_DC27_DG28BB2BB07580.19 BB07
0613c29_D_DG28_DA29BBBBB00920.13 BB00
0623c29_D_DA29_DA30B12BB04800.21 BB04
0633c29_D_DA30_DG31B12BB04800.17 BB04
0643c29_D_DG31_DT32BBBBB00340.33 BB00
0653c29_D_DT32_DT33BBBBB00590.21 BB00
0663c29_D_DT33_DA34B12BB04720.26 BB04
0673c29_D_DA34_DT35miBBB12870.19 BB12
0683c29_E_DA2_DT3BBBBB0090.34 BB00
0693c29_E_DT3_DA4BBBBB00330.52 BB00
0703c29_E_DA4_DA5BBBBB00400.37 BB00
0713c29_E_DA5_DC6B-ABA09850.19 BA09
0723c29_E_DC6_DT7A-BAB05490.26 AB05
0733c29_E_DT7_DT8BBBBB01900.12 BB01
0743c29_E_DT8_DC9BBBBB01580.23 BB01
0753c29_E_DC9_DG10BBBBB01280.38 BB01
0763c29_E_DG10_DT11NANNANT00.39 BB01
0773c29_E_DT11_DA12BBBBB00870.19 BB00
0783c29_E_DA12_DT13BBBBB00730.22 BB00
0793c29_E_DT13_DA14B12BB04720.24 BB04
0803c29_E_DA14_1AP15BBBBB00470.29 BB00
0813c29_E_1AP15_DT16NANNANT00.72 AB02
0823c29_E_DT16_DG17BBBBB00640.33 BB00
0833c29_E_DG17_DT18BBBBB00370.24 BB00
0843c29_E_DT18_DA19BBBBB01870.17 BB01
0853c29_E_DA19_DT20BBBBB00670.29 BB00
0863c29_E_DT20_DG21BBBBB00530.31 BB00
0873c29_E_DG21_DC22NANNANT00.50 BA17
0883c29_E_DC22_DT23BBwBB16540.61 BB16
0893c29_E_DT23_DA24B-ABA08680.29 BA08
0903c29_E_DA24_DT25A-BAB01680.28 AB01
0913c29_E_DT25_DA26BBBBB00200.45 BB00
0923c29_E_DA26_DC27BBBBB00770.28 BB00
0933c29_E_DC27_DG28BB2BB07860.17 BB07
0943c29_E_DG28_DA29BBBBB00500.13 BB00
0953c29_E_DA29_DA30B12BB04790.16 BB04
0963c29_E_DA30_DG31BBBBB01860.14 BB01
0973c29_E_DG31_DT32BBBBB00530.38 BB00
0983c29_E_DT32_DT33NANNANT00.25 BB00
0993c29_E_DT33_DA34miBBB10730.35 BB10
1003c29_E_DA34_DT35B12BB05610.27 BB05
1013c29_F_DA2_DT3NANNANT00.49 BB00
1023c29_F_DT3_DA4BB2BB07800.21 BB07
1033c29_F_DA4_DA5BBBBB00480.40 BB00
1043c29_F_DA5_DC6B-ABA09690.18 BA09
1053c29_F_DC6_DT7A-BAB05570.24 AB05
1063c29_F_DT7_DT8BBBBB01890.12 BB01
1073c29_F_DT8_DC9BBBBB01540.20 BB01
1083c29_F_DC9_DG10BBBBB00330.35 BB00
1093c29_F_DG10_DT11BBBBB00750.27 BB00
1103c29_F_DT11_DA12BBBBB00890.24 BB00
1113c29_F_DA12_DT13BBBBB00930.19 BB00
1123c29_F_DT13_DA14B12BB04670.21 BB04
1133c29_F_DA14_DG15BBBBB01710.17 BB01
1143c29_F_DG15_DC16NANNANT00.60 BA09
1153c29_F_DC16_DA17AAAAA00660.35 AA00
1163c29_F_DA17_DT18NANNANT00.45 AB04
1173c29_F_DT18_DA19BBBBB00140.35 BB00
1183c29_F_DA19_DC20B-ABA05880.21 BA05
1193c29_F_DC20_DA21A-BAB03370.30 AB03
1203c29_F_DA21_DT22B-ABA09870.29 BA09
1213c29_F_DT22_DT23A-BAB05300.39 AB05
1223c29_F_DT23_DA24B-ABA08390.38 BA08
1233c29_F_DA24_DT25A-BAB05540.26 AB05
1243c29_F_DT25_DA26NANNANT00.34 BB17
1253c29_F_DA26_DC27BBBBB00760.29 BB00
1263c29_F_DC27_DG28BB2BB07830.18 BB07
1273c29_F_DG28_DA29BBBBB00880.14 BB00
1283c29_F_DA29_DA30B12BB04760.18 BB04
1293c29_F_DA30_DG31BBBBB00640.23 BB00
1303c29_F_DG31_DT32BBBBB00420.34 BB00
1313c29_F_DT32_DT33BBBBB00540.31 BB00
1323c29_F_DT33_DA34B12BB04690.25 BB04
1333c29_F_DA34_DT35miBBB12890.12 BB12

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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