Conformers:
ABBIImiBZICOPNSYNN
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Structure of E. coli 5-Methyluridine Methyltransferase TrmA in complex with 19 nucleotide T-arm analogue
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 36 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 3bt7_C_G48_C49 | NAN | NANT | 0 | 0.46 |
| 02 | 3bt7_C_C49_U50 | AAA | AA00 | 51 | 0.19 |
| 03 | 3bt7_C_U50_G51 | AAA | AA00 | 87 | 0.21 |
| 04 | 3bt7_C_G51_U52 | AAA | AA00 | 74 | 0.20 |
| 05 | 3bt7_C_U52_G53 | A-B | AB05 | 86 | 0.13 |
| 06 | 3bt7_C_G53_5MU54 | NAN | NANT | 0 | 0.96 |
| 07 | 3bt7_C_5MU54_U55 | NAN | NANT | 0 | 0.61 |
| 08 | 3bt7_C_U55_C56 | AAA | AA04 | 51 | 0.50 |
| 09 | 3bt7_C_C56_G57 | NAN | NANT | 0 | 0.66 |
| 10 | 3bt7_C_G57_A58 | NAN | NANT | 0 | 0.61 |
| 11 | 3bt7_C_A58_U59 | NAN | NANT | 0 | 0.67 |
| 12 | 3bt7_C_U59_C60 | NAN | NANT | 0 | 0.67 |
| 13 | 3bt7_C_C60_C61 | NAN | NANT | 0 | 1.17 |
| 14 | 3bt7_C_C61_A62 | SYN | AAS1 | 74 | 0.39 |
| 15 | 3bt7_C_A62_C63 | AAA | AA04 | 85 | 0.13 |
| 16 | 3bt7_C_C63_A64 | AAA | AA00 | 84 | 0.11 |
| 17 | 3bt7_C_A64_G65 | AAA | AA08 | 81 | 0.21 |
| 18 | 3bt7_C_G65_C66 | AAA | AA03 | 44 | 0.38 |
| 19 | 3bt7_D_G48_C49 | NAN | NANT | 0 | 0.33 |
| 20 | 3bt7_D_C49_U50 | AAA | AA00 | 39 | 0.29 |
| 21 | 3bt7_D_U50_G51 | AAA | AA08 | 44 | 0.28 |
| 22 | 3bt7_D_G51_U52 | AAA | AA00 | 60 | 0.24 |
| 23 | 3bt7_D_U52_G53 | A-B | AB05 | 72 | 0.20 |
| 24 | 3bt7_D_G53_5MU54 | NAN | NANT | 0 | 0.94 |
| 25 | 3bt7_D_5MU54_U55 | NAN | NANT | 0 | 0.57 |
| 26 | 3bt7_D_U55_C56 | AAw | AA10 | 39 | 0.52 |
| 27 | 3bt7_D_C56_G57 | AAA | AA08 | 8 | 0.66 |
| 28 | 3bt7_D_G57_A58 | AAA | AA00 | 18 | 0.32 |
| 29 | 3bt7_D_A58_U59 | NAN | NANT | 0 | 1.71 |
| 30 | 3bt7_D_U59_C60 | NAN | NANT | 0 | 0.63 |
| 31 | 3bt7_D_C60_C61 | NAN | NANT | 0 | 0.47 |
| 32 | 3bt7_D_C61_A62 | AAA | AA00 | 90 | 0.18 |
| 33 | 3bt7_D_A62_C63 | AAA | AA00 | 88 | 0.13 |
| 34 | 3bt7_D_C63_A64 | AAA | AA08 | 69 | 0.25 |
| 35 | 3bt7_D_A64_G65 | AAA | AA00 | 45 | 0.22 |
| 36 | 3bt7_D_G65_C66 | AAA | AA04 | 82 | 0.27 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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| Color by NtC (balls) |
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| B | ||||
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