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Conformers: ABBIImiBZICOPNSYNN
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Crystal Structure of Human Pumilio 1 in complex with Puf5 RNA

Results of the assignment of 17 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
013bsx_C_U1_U2NANNANT01.77 OP16
023bsx_C_U2_G3NANNANT00.56 AA12
033bsx_C_G3_U4ICLIC07830.19 IC07
043bsx_C_U4_A5NANNANT00.96 OP08
053bsx_C_A5_A6NANNANT00.49 IC01
063bsx_C_A6_U7NANNANT02.06 OP18
073bsx_C_U7_A8NANNANT02.20 OP01
083bsx_C_A8_U9NANNANT00.86 IC03
093bsx_C_U9_U10AAuAA12450.57 AA12
103bsx_D_U2_G3AAuAA12280.56 AA12
113bsx_D_G3_U4ICLIC07570.26 IC07
123bsx_D_U4_A5NANNANT01.04 OP08
133bsx_D_A5_A6NANNANT01.59 OP31
143bsx_D_A6_U7NANNANT01.30 OP17
153bsx_D_U7_A8NANNANT02.55 OP01
163bsx_D_A8_U9NANNANT01.10 AA07
173bsx_D_U9_U10NANNANT00.60 AA12

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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