Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
CSL (Lag-1) bound to DNA with Lin-12 RAM peptide, C2221
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 28 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 3brf_B_DT1_DT2 | B12 | BB04 | 22 | 0.35 |
| 02 | 3brf_B_DT2_DA3 | BBB | BB00 | 71 | 0.20 |
| 03 | 3brf_B_DA3_DC4 | BBB | BB00 | 63 | 0.20 |
| 04 | 3brf_B_DC4_DT5 | BBB | BB00 | 70 | 0.23 |
| 05 | 3brf_B_DT5_DG6 | NAN | NANT | 0 | 0.52 |
| 06 | 3brf_B_DG6_DT7 | BBB | BB01 | 55 | 0.36 |
| 07 | 3brf_B_DT7_DG8 | BBB | BB00 | 58 | 0.30 |
| 08 | 3brf_B_DG8_DG9 | BBB | BB00 | 79 | 0.19 |
| 09 | 3brf_B_DG9_DG10 | BBB | BB00 | 78 | 0.26 |
| 10 | 3brf_B_DG10_DA11 | BBB | BB00 | 84 | 0.27 |
| 11 | 3brf_B_DA11_DA12 | BBB | BB00 | 79 | 0.13 |
| 12 | 3brf_B_DA12_DA13 | BBB | BB00 | 73 | 0.20 |
| 13 | 3brf_B_DA13_DG14 | miB | BB15 | 50 | 0.28 |
| 14 | 3brf_B_DG14_DA15 | NAN | NANT | 0 | 0.36 |
| 15 | 3brf_C_DA1_DA2 | SYN | BBS1 | 86 | 0.20 |
| 16 | 3brf_C_DA2_DT3 | BBB | BB01 | 59 | 0.17 |
| 17 | 3brf_C_DT3_DC4 | BBB | BB00 | 28 | 0.27 |
| 18 | 3brf_C_DC4_DT5 | BBB | BB00 | 60 | 0.33 |
| 19 | 3brf_C_DT5_DT6 | BBB | BB00 | 63 | 0.15 |
| 20 | 3brf_C_DT6_DT7 | BBB | BB01 | 90 | 0.16 |
| 21 | 3brf_C_DT7_DC8 | BBB | BB01 | 79 | 0.20 |
| 22 | 3brf_C_DC8_DC9 | BBB | BB01 | 40 | 0.15 |
| 23 | 3brf_C_DC9_DC10 | BBB | BB01 | 51 | 0.27 |
| 24 | 3brf_C_DC10_DA11 | B12 | BB04 | 78 | 0.24 |
| 25 | 3brf_C_DA11_DC12 | BBB | BB00 | 78 | 0.21 |
| 26 | 3brf_C_DC12_DA13 | BBB | BB00 | 55 | 0.33 |
| 27 | 3brf_C_DA13_DG14 | NAN | NANT | 0 | 0.50 |
| 28 | 3brf_C_DG14_DT15 | NAN | NANT | 0 | 0.39 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
Show
| Color by conformation group (pyramids) | |
|---|---|
| group | |||||||||
| visible |
| Color by NtC (balls) |
|---|
| A | ||||
|---|---|---|---|---|
| A-B | ||||
|---|---|---|---|---|
| B-A | ||||
|---|---|---|---|---|
| B | ||||
|---|---|---|---|---|
| IC | ||||
|---|---|---|---|---|
| OPN | ||||
|---|---|---|---|---|
| Z | ||||
|---|---|---|---|---|
| N | ||||
|---|---|---|---|---|