Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Insertion ternary complex of Dbh DNA polymerase
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 21 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 3bq1_P_DG1_DA2 | BBB | BB00 | 71 | 0.26 |
| 02 | 3bq1_P_DA2_DA3 | BB2 | BB07 | 80 | 0.29 |
| 03 | 3bq1_P_DA3_DG4 | miB | BB10 | 74 | 0.21 |
| 04 | 3bq1_P_DG4_DC5 | miB | BB14 | 93 | 0.23 |
| 05 | 3bq1_P_DC5_DC6 | B12 | BB04 | 30 | 0.41 |
| 06 | 3bq1_P_DC6_DG7 | B12 | BB04 | 88 | 0.14 |
| 07 | 3bq1_P_DG7_DG8 | miB | BB10 | 48 | 0.39 |
| 08 | 3bq1_P_DG8_DC9 | BBB | BB00 | 73 | 0.23 |
| 09 | 3bq1_P_DC9_DG10 | BBB | BB00 | 54 | 0.41 |
| 10 | 3bq1_T_DT2_DC3 | NAN | NANT | 0 | 1.23 |
| 11 | 3bq1_T_DC3_DC4 | BBB | BB00 | 17 | 0.42 |
| 12 | 3bq1_T_DC4_DG5 | BBB | BB00 | 70 | 0.27 |
| 13 | 3bq1_T_DG5_DC6 | NAN | NANT | 0 | 0.42 |
| 14 | 3bq1_T_DC6_DC7 | NAN | NANT | 0 | 1.27 |
| 15 | 3bq1_T_DC7_DC8 | NAN | NANT | 0 | 0.66 |
| 16 | 3bq1_T_DC8_DG9 | B12 | BB04 | 55 | 0.24 |
| 17 | 3bq1_T_DG9_DG10 | B12 | BB04 | 77 | 0.15 |
| 18 | 3bq1_T_DG10_DC11 | BBB | BB00 | 70 | 0.21 |
| 19 | 3bq1_T_DC11_DT12 | miB | BB10 | 69 | 0.28 |
| 20 | 3bq1_T_DT12_DT13 | BBB | BB01 | 70 | 0.23 |
| 21 | 3bq1_T_DT13_DC14 | BBB | BB00 | 42 | 0.31 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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