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Conformers: ABBIImiBZICOPNSYNN
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Structure of a sliding clamp on DNA

Results of the assignment of 22 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
013bep_C_DC2_DC3BBBBB00800.23 BB00
023bep_C_DC3_DC4BBBBB00520.37 BB00
033bep_C_DC4_DA5BBBBB00950.18 BB00
043bep_C_DA5_DT6BBBBB00790.20 BB00
053bep_C_DT6_DC7BBBBB00100.44 BB00
063bep_C_DC7_DG8BB2BB07770.38 BB07
073bep_C_DG8_DT9BBBBB00350.46 BB00
083bep_C_DT9_DA10BB2BB07780.24 BB07
093bep_C_DA10_DT11BBBBB00440.30 BB00
103bep_D_DT11_DT12NANNANT00.58 OP26
113bep_D_DT12_DT13BBwBB16100.74 BB16
123bep_D_DT13_DT14NANNANT01.59 OP22
133bep_D_DT14_DA15NANNANT02.23 OP17
143bep_D_DA15_DT16NANNANT00.66 OP11
153bep_D_DT16_DA17BBBBB00570.35 BB00
163bep_D_DA17_DC18B12BB04730.28 BB04
173bep_D_DC18_DG19B12BB04910.20 BB04
183bep_D_DG19_DA20BBBBB00870.21 BB00
193bep_D_DA20_DT21BBBBB00450.34 BB00
203bep_D_DT21_DG22B12BB04780.35 BB04
213bep_D_DG22_DG23BBBBB00700.28 BB00
223bep_D_DG23_DG24BBBBB00650.37 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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