Home or other PDB ID
 
 
 
 
 
 
 
 
 
Selection mode
 
 
 
 
 
 
Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Nucleosome core particle treated with cisplatin

Results of the assignment of 292 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0013b6f_I_DA-73_DT-72BBBBB0160.41 BB01
0023b6f_I_DT-72_DC-71BBBBB00530.28 BB00
0033b6f_I_DC-71_DA-70BBBBB01590.25 BB01
0043b6f_I_DA-70_DA-69BBBBB00210.39 BB00
0053b6f_I_DA-69_DT-68NANNANT00.43 BB08
0063b6f_I_DT-68_DA-67BBBBB00500.28 BB00
0073b6f_I_DA-67_DT-66BBBBB00500.18 BB00
0083b6f_I_DT-66_DC-65NANNANT00.46 BB04
0093b6f_I_DC-65_DC-64NANNANT00.50 BB10
0103b6f_I_DC-64_DA-63NANNANT00.42 BA08
0113b6f_I_DA-63_DC-62NANNANT00.26 BB01
0123b6f_I_DC-62_DC-61NANNANT00.54 AA08
0133b6f_I_DC-61_DT-60A-BAB01270.34 AB01
0143b6f_I_DT-60_DG-59miBBB10570.43 BB10
0153b6f_I_DG-59_DC-58BB2BB07180.35 BB07
0163b6f_I_DC-58_DA-57NANNANT00.55 BB07
0173b6f_I_DA-57_DG-56miBBB10860.24 BB10
0183b6f_I_DG-56_DA-55NANNANT00.58 BA08
0193b6f_I_DA-55_DT-54BBwBB16190.60 BB16
0203b6f_I_DT-54_DA-53BBwBB17770.28 BB17
0213b6f_I_DA-53_DC-52B-ABA13370.32 BA13
0223b6f_I_DC-52_DT-51NANNANT00.53 AB04
0233b6f_I_DT-51_DA-50B-ABA05120.36 BA05
0243b6f_I_DA-50_DC-49A-BAB01410.52 AB01
0253b6f_I_DC-49_DC-48BBBBB01510.52 BB01
0263b6f_I_DC-48_DA-47NANNANT00.70 BA17
0273b6f_I_DA-47_DA-46NANNANT00.63 BB01
0283b6f_I_DA-46_DA-45BBBBB01230.39 BB01
0293b6f_I_DA-45_DA-44BBBBB00680.29 BB00
0303b6f_I_DA-44_DG-43miBBB10340.38 BB10
0313b6f_I_DG-43_DT-42BBwBB16250.90 BB16
0323b6f_I_DT-42_DG-41BBBBB01700.20 BB01
0333b6f_I_DG-41_DT-40NANNANT00.43 BB05
0343b6f_I_DT-40_DA-39BBBBB0090.39 BB00
0353b6f_I_DA-39_DT-38BBBBB01130.31 BB01
0363b6f_I_DT-38_DT-37A-BAB03540.41 AB03
0373b6f_I_DT-37_DT-36B-ABA08420.45 BA08
0383b6f_I_DT-36_DG-35NANNANT00.50 BB07
0393b6f_I_DG-35_DG-34NANNANT00.41 BA05
0403b6f_I_DG-34_DA-33NANNANT00.52 BB04
0413b6f_I_DA-33_DA-32BBwBB17540.45 BB17
0423b6f_I_DA-32_DA-31NANNANT00.64 BB12
0433b6f_I_DA-31_DC-30NANNANT00.57 AA02
0443b6f_I_DC-30_DT-29NANNANT00.55 AB04
0453b6f_I_DT-29_DG-28B12BB04670.23 BB04
0463b6f_I_DG-28_DC-27B12BB04110.59 BB04
0473b6f_I_DC-27_DT-26BB2BB07350.44 BB07
0483b6f_I_DT-26_DC-25BBBBB01470.34 BB01
0493b6f_I_DC-25_DC-24B12BB04240.29 BB04
0503b6f_I_DC-24_DA-23BBBBB01320.27 BB01
0513b6f_I_DA-23_DT-22NANNANT00.42 BB11
0523b6f_I_DT-22_DC-21NANNANT00.36 BB02
0533b6f_I_DC-21_DA-20NANNANT00.24 BB15
0543b6f_I_DA-20_DA-19NANNANT00.62 BB17
0553b6f_I_DA-19_DA-18NANNANT00.65 BB08
0563b6f_I_DA-18_DA-17BBBBB00410.41 BB00
0573b6f_I_DA-17_DG-16BBBBB00610.29 BB00
0583b6f_I_DG-16_DG-15NANNANT00.37 BB07
0593b6f_I_DG-15_DC-14NANNANT00.51 BB17
0603b6f_I_DC-14_DA-13BBBBB00360.34 BB00
0613b6f_I_DA-13_DT-12BBBBB00780.25 BB00
0623b6f_I_DT-12_DG-11B-ABA17370.46 BA17
0633b6f_I_DG-11_DT-10B-ABA05290.24 BA05
0643b6f_I_DT-10_DT-9A-BAB01180.29 AB01
0653b6f_I_DT-9_DC-8B-ABA05120.28 BA05
0663b6f_I_DC-8_DA-7A-BAB01360.50 AB01
0673b6f_I_DA-7_DG-6NANNANT00.30 BB10
0683b6f_I_DG-6_DC-5BBBBB00240.39 BB00
0693b6f_I_DC-5_DT-4BB2BB07470.40 BB07
0703b6f_I_DT-4_DG-3NANNANT00.55 BB00
0713b6f_I_DG-3_DG-2BBBBB00740.32 BB00
0723b6f_I_DG-2_DA-1NANNANT00.47 BA17
0733b6f_I_DA-1_DA0NANNANT00.57 AB01
0743b6f_I_DA0_DT1NANNANT00.70 BB02
0753b6f_I_DT1_DC2BBBBB00560.31 BB00
0763b6f_I_DC2_DC3BBwBB17500.33 BB17
0773b6f_I_DC3_DA4BB2BB07320.39 BB07
0783b6f_I_DA4_DG5BBBBB00760.23 BB00
0793b6f_I_DG5_DC6BB2BB07310.33 BB07
0803b6f_I_DC6_DT7B12BB04250.49 BB04
0813b6f_I_DT7_DG8BBBBB00250.44 BB00
0823b6f_I_DG8_DA9BBBBB00100.38 BB00
0833b6f_I_DA9_DA10BBBBB00810.22 BB00
0843b6f_I_DA10_DC11NANNANT00.23 BB10
0853b6f_I_DC11_DA12A-BAB01420.38 AB01
0863b6f_I_DA12_DT13BBwBB03270.31 BB03
0873b6f_I_DT13_DG14B12BB04100.60 BB04
0883b6f_I_DG14_DC15BB2BB07480.21 BB07
0893b6f_I_DC15_DC16BB2BB07300.39 BB07
0903b6f_I_DC16_DT17BB2BB07340.34 BB07
0913b6f_I_DT17_DT18miBBB10180.45 BB10
0923b6f_I_DT18_DT19B-ABA08610.44 BA08
0933b6f_I_DT19_DT20NANNANT00.68 BB16
0943b6f_I_DT20_DG21NANNANT00.54 BB12
0953b6f_I_DG21_DA22AAAAA08310.43 AA08
0963b6f_I_DA22_DT23A-BAB01160.40 AB01
0973b6f_I_DT23_DG24NANNANT00.47 BB13
0983b6f_I_DG24_DG25BBBBB00230.63 BB00
0993b6f_I_DG25_DA26BB2BB07450.35 BB07
1003b6f_I_DA26_DG27miBBB10330.52 BB10
1013b6f_I_DG27_DC28BB2BB07200.50 BB07
1023b6f_I_DC28_DA29BBBBB00510.28 BB00
1033b6f_I_DA29_DG30B-ABA05350.41 BA05
1043b6f_I_DG30_DT31NANNANT00.37 BB01
1053b6f_I_DT31_DT32B-ABA05190.30 BA05
1063b6f_I_DT32_DT33NANNANT00.60 AA04
1073b6f_I_DT33_DC34A-BAB01310.45 AB01
1083b6f_I_DC34_DC35miBBB10300.58 BB10
1093b6f_I_DC35_DA36NANNANT00.62 BA08
1103b6f_I_DA36_DA37BBBBB01320.33 BB01
1113b6f_I_DA37_DA38BBBBB00220.33 BB00
1123b6f_I_DA38_DT39BBwBB16140.88 BB16
1133b6f_I_DT39_DA40B-ABA05610.30 BA05
1143b6f_I_DA40_DC41NANNANT00.51 BA10
1153b6f_I_DC41_DA42BBBBB00530.51 BB00
1163b6f_I_DA42_DC43BBBBB00360.37 BB00
1173b6f_I_DC43_DT44BBBBB00310.42 BB00
1183b6f_I_DT44_DT45BBBBB00290.38 BB00
1193b6f_I_DT45_DT46NANNANT00.43 BA08
1203b6f_I_DT46_DT47A-BAB0190.45 AB01
1213b6f_I_DT47_DG48NANNANT00.69 BA17
1223b6f_I_DG48_DG49BBBBB00320.37 BB00
1233b6f_I_DG49_DT50BBBBB01820.19 BB01
1243b6f_I_DT50_DA51NANNANT00.65 BB02
1253b6f_I_DA51_DG52B12BB05320.32 BB05
1263b6f_I_DG52_DT53NANNANT00.69 BB17
1273b6f_I_DT53_DA54BBBBB00670.25 BB00
1283b6f_I_DA54_DT55NANNANT00.59 BA08
1293b6f_I_DT55_DC56BBBBB00410.36 BB00
1303b6f_I_DC56_DT57BBBBB00600.41 BB00
1313b6f_I_DT57_DG58BB2BB07320.34 BB07
1323b6f_I_DG58_DC59BBBBB00180.36 BB00
1333b6f_I_DC59_DA60NANNANT00.62 BB10
1343b6f_I_DA60_DG61NANNANT00.47 BA08
1353b6f_I_DG61_DG62NANNANT00.80 BB03
1363b6f_I_DG62_DT63NANNANT00.27 BA05
1373b6f_I_DT63_DG64NANNANT00.49 AA01
1383b6f_I_DG64_DG65BBBBB00310.56 BB00
1393b6f_I_DG65_DA66BBwBB17630.38 BB17
1403b6f_I_DA66_DT67miBBB10890.28 BB10
1413b6f_I_DT67_DA68BB2BB07110.51 BB07
1423b6f_I_DA68_DT69NANNANT00.52 BB16
1433b6f_I_DT69_DT70BBBBB01400.27 BB01
1443b6f_I_DT70_DG71BBBBB01370.42 BB01
1453b6f_I_DG71_DA72NANNANT00.91 BB12
1463b6f_I_DA72_DT73NANNANT00.70 AA11
1473b6f_J_DA-73_DT-72BBBBB0080.54 BB00
1483b6f_J_DT-72_DC-71BBBBB01340.38 BB01
1493b6f_J_DC-71_DA-70NANNANT00.64 BA17
1503b6f_J_DA-70_DA-69BBwBB17240.48 BB17
1513b6f_J_DA-69_DT-68B12BB05140.29 BB05
1523b6f_J_DT-68_DA-67NANNANT00.66 BA08
1533b6f_J_DA-67_DT-66BBBBB01540.28 BB01
1543b6f_J_DT-66_DC-65NANNANT00.49 BB07
1553b6f_J_DC-65_DC-64NANNANT00.67 BA08
1563b6f_J_DC-64_DA-63A-BAB01160.44 AB01
1573b6f_J_DA-63_DC-62BBBBB00410.43 BB00
1583b6f_J_DC-62_DC-61BBwBB17510.40 BB17
1593b6f_J_DC-61_DT-60BBBBB01550.26 BB01
1603b6f_J_DT-60_DG-59B12BB04130.41 BB04
1613b6f_J_DG-59_DC-58BBBBB00360.50 BB00
1623b6f_J_DC-58_DA-57NANNANT00.53 BB07
1633b6f_J_DA-57_DG-56BBwBB03270.38 BB03
1643b6f_J_DG-56_DA-55NANNANT00.47 BA08
1653b6f_J_DA-55_DT-54B-ABA01220.24 BA01
1663b6f_J_DT-54_DA-53NANNANT00.56 AA02
1673b6f_J_DA-53_DC-52BBBBB01120.33 BB01
1683b6f_J_DC-52_DT-51BBBBB00390.32 BB00
1693b6f_J_DT-51_DA-50BBBBB01600.23 BB01
1703b6f_J_DA-50_DC-49B-ABA05820.20 BA05
1713b6f_J_DC-49_DC-48NANNANT00.61 BA08
1723b6f_J_DC-48_DA-47NANNANT00.74 BB07
1733b6f_J_DA-47_DA-46BBBBB00350.24 BB00
1743b6f_J_DA-46_DA-45BB2BB07480.31 BB07
1753b6f_J_DA-45_DA-44BBBBB00450.32 BB00
1763b6f_J_DA-44_DG-43B-ABA05200.36 BA05
1773b6f_J_DG-43_DT-42BBBBB01410.19 BB01
1783b6f_J_DT-42_DG-41miBBB13320.57 BB13
1793b6f_J_DG-41_DT-40BBBBB00180.34 BB00
1803b6f_J_DT-40_DA-39miBBB10480.32 BB10
1813b6f_J_DA-39_DT-38B-ABA05400.54 BA05
1823b6f_J_DT-38_DT-37BBBBB00150.53 BB00
1833b6f_J_DT-37_DT-36BBBBB00320.40 BB00
1843b6f_J_DT-36_DG-35BB2BB07360.37 BB07
1853b6f_J_DG-35_DG-34BBBBB00180.43 BB00
1863b6f_J_DG-34_DA-33miBBB10600.60 BB10
1873b6f_J_DA-33_DA-32miBBB10420.28 BB10
1883b6f_J_DA-32_DA-31NANNANT00.39 BA08
1893b6f_J_DA-31_DC-30NANNANT00.66 BB16
1903b6f_J_DC-30_DT-29BBwBB17520.42 BB17
1913b6f_J_DT-29_DG-28BB2BB07240.39 BB07
1923b6f_J_DG-28_DC-27miBBB10390.29 BB10
1933b6f_J_DC-27_DT-26miBBB10320.62 BB10
1943b6f_J_DT-26_DC-25NANNANT00.33 AB03
1953b6f_J_DC-25_DC-24B12BB04170.43 BB04
1963b6f_J_DC-24_DA-23B12BB04640.27 BB04
1973b6f_J_DA-23_DT-22B-ABA05680.19 BA05
1983b6f_J_DT-22_DC-21NANNANT00.71 AA08
1993b6f_J_DC-21_DA-20AAAAA00510.40 AA00
2003b6f_J_DA-20_DA-19NANNANT00.54 AB03
2013b6f_J_DA-19_DA-18miBBB10620.40 BB10
2023b6f_J_DA-18_DA-17BBBBB00190.33 BB00
2033b6f_J_DA-17_DG-16BB2BB07380.37 BB07
2043b6f_J_DG-16_DG-15NANNANT00.74 BB10
2053b6f_J_DG-15_DC-14miBBB14590.40 BB14
2063b6f_J_DC-14_DA-13B12BB04590.23 BB04
2073b6f_J_DA-13_DT-12BBBBB00730.25 BB00
2083b6f_J_DT-12_DG-11B12BB04500.52 BB04
2093b6f_J_DG-11_DT-10NANNANT00.41 BB10
2103b6f_J_DT-10_DT-9BBBBB01200.35 BB01
2113b6f_J_DT-9_DC-8BBBBB01480.28 BB01
2123b6f_J_DC-8_DA-7miBBB13460.42 BB13
2133b6f_J_DA-7_DG-6NANNANT00.55 BB07
2143b6f_J_DG-6_DC-5BBwBB17360.40 BB17
2153b6f_J_DC-5_DT-4BB2BB07500.29 BB07
2163b6f_J_DT-4_DG-3NANNANT00.41 AB03
2173b6f_J_DG-3_DG-2BBBBB00640.30 BB00
2183b6f_J_DG-2_DA-1B12BB04190.31 BB04
2193b6f_J_DA-1_DT0NANNANT00.34 BA01
2203b6f_J_DT0_DT1A-BAB01150.29 AB01
2213b6f_J_DT1_DC2BBBBB01390.30 BB01
2223b6f_J_DC2_DC3NANNANT00.48 BB10
2233b6f_J_DC3_DA4NANNANT00.66 BA17
2243b6f_J_DA4_DG5B12BB04420.34 BB04
2253b6f_J_DG5_DC6BB2BB07700.20 BB07
2263b6f_J_DC6_DT7BBBBB01520.29 BB01
2273b6f_J_DT7_DG8B12BB0470.40 BB04
2283b6f_J_DG8_DA9B-ABA01340.32 BA01
2293b6f_J_DA9_DA10BBBBB01310.45 BB01
2303b6f_J_DA10_DC11miBBB10490.29 BB10
2313b6f_J_DC11_DA12B-ABA08740.31 BA08
2323b6f_J_DA12_DT13NANNANT00.78 AA06
2333b6f_J_DT13_DG14BBwBB16390.37 BB16
2343b6f_J_DG14_DC15NANNANT00.77 BA17
2353b6f_J_DC15_DC16BBBBB00340.47 BB00
2363b6f_J_DC16_DT17NANNANT00.67 BB04
2373b6f_J_DT17_DT18BBBBB01440.44 BB01
2383b6f_J_DT18_DT19B-ABA05650.28 BA05
2393b6f_J_DT19_DT20NANNANT00.52 BB10
2403b6f_J_DT20_DG21NANNANT00.64 BA17
2413b6f_J_DG21_DA22BBBBB00370.27 BB00
2423b6f_J_DA22_DT23NANNANT00.77 BA05
2433b6f_J_DT23_DG24NANNANT00.68 BB11
2443b6f_J_DG24_DG25NANNANT00.57 BB10
2453b6f_J_DG25_DA26NANNANT00.69 BB07
2463b6f_J_DA26_DG27BBBBB00350.74 BB00
2473b6f_J_DG27_DC28BB2BB07320.30 BB07
2483b6f_J_DC28_DA29BBBBB01240.26 BB01
2493b6f_J_DA29_DG30B-ABA05440.15 BA05
2503b6f_J_DG30_DT31AAAAA00250.48 AA00
2513b6f_J_DT31_DT32A-BAB03260.43 AB03
2523b6f_J_DT32_DT33NANNANT00.35 BB05
2533b6f_J_DT33_DC34NANNANT00.30 BB16
2543b6f_J_DC34_DC35NANNANT00.55 BA17
2553b6f_J_DC35_DA36NANNANT00.56 BA17
2563b6f_J_DA36_DA37B-ABA05590.33 BA05
2573b6f_J_DA37_DA38BBBBB00260.40 BB00
2583b6f_J_DA38_DT39miBBB10710.24 BB10
2593b6f_J_DT39_DA40BB2BB07120.39 BB07
2603b6f_J_DA40_DC41B-ABA01130.50 BA01
2613b6f_J_DC41_DA42NANNANT00.48 AB04
2623b6f_J_DA42_DC43NANNANT00.29 BB02
2633b6f_J_DC43_DT44B-ABA05650.30 BA05
2643b6f_J_DT44_DT45A-BAB01390.32 AB01
2653b6f_J_DT45_DT46NANNANT00.66 BA08
2663b6f_J_DT46_DT47A-BAB01390.54 AB01
2673b6f_J_DT47_DG48BB2BB07120.38 BB07
2683b6f_J_DG48_DG49BBwBB17330.57 BB17
2693b6f_J_DG49_DT50BBBBB00110.61 BB00
2703b6f_J_DT50_DA51miBBB10720.25 BB10
2713b6f_J_DA51_DG52miBBB10540.32 BB10
2723b6f_J_DG52_DT53miBBB10760.23 BB10
2733b6f_J_DT53_DA54NANNANT00.38 BA08
2743b6f_J_DA54_DT55B12BB04150.47 BB04
2753b6f_J_DT55_DC56BBwBB11570.37 BB11
2763b6f_J_DC56_DT57NANNANT00.48 BB16
2773b6f_J_DT57_DG58NANNANT00.40 BB07
2783b6f_J_DG58_DC59BBBBB00540.24 BB00
2793b6f_J_DC59_DA60B12BB04540.31 BB04
2803b6f_J_DA60_DG61BBBBB01650.34 BB01
2813b6f_J_DG61_DG62B-ABA08610.26 BA08
2823b6f_J_DG62_DT63A-BAB01690.46 AB01
2833b6f_J_DT63_DG64BBBBB00680.43 BB00
2843b6f_J_DG64_DG65B-ABA08660.36 BA08
2853b6f_J_DG65_DA66NANNANT00.67 BB03
2863b6f_J_DA66_DT67BBBBB00290.27 BB00
2873b6f_J_DT67_DA68BBBBB00140.49 BB00
2883b6f_J_DA68_DT69BBBBB00820.18 BB00
2893b6f_J_DT69_DT70BBBBB00900.16 BB00
2903b6f_J_DT70_DG71BBBBB00860.17 BB00
2913b6f_J_DG71_DA72BB2BB07480.34 BB07
2923b6f_J_DA72_DT73NANNANT00.69 BA10

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show




Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N