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Conformers: ABBIImiBZICOPNSYNN
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Crystal Structure of Human Nucleosome Core Particle Containing H3K122Q mutation

Results of the assignment of 288 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0013azh_I_DA1_DT2NANNANT00.62 BB00
0023azh_I_DT2_DC3BBBBB00490.33 BB00
0033azh_I_DC3_DA4B12BB04560.31 BB04
0043azh_I_DA4_DA5BBBBB00630.25 BB00
0053azh_I_DA5_DT6miBBB13570.23 BB13
0063azh_I_DT6_DA7miBBB13540.39 BB13
0073azh_I_DA7_DT8NANNANT00.54 BB13
0083azh_I_DT8_DC9NANNANT00.63 BB02
0093azh_I_DC9_DC10BBwBB02210.64 BB02
0103azh_I_DC10_DA11miBBB13530.41 BB13
0113azh_I_DA11_DC12BBBBB00170.49 BB00
0123azh_I_DC12_DC13BBBBB00160.39 BB00
0133azh_I_DC13_DT14miBBB13360.51 BB13
0143azh_I_DT14_DG15BBBBB00160.50 BB00
0153azh_I_DG15_DC16NANNANT00.47 BB03
0163azh_I_DC16_DA17NANNANT00.88 BB12
0173azh_I_DA17_DG18NANNANT00.68 BB02
0183azh_I_DG18_DA19BBwBB02820.25 BB02
0193azh_I_DA19_DT20BBBBB00480.29 BB00
0203azh_I_DT20_DT21miBBB13780.25 BB13
0213azh_I_DT21_DC22BBwBB03710.29 BB03
0223azh_I_DC22_DT23NANNANT00.52 BB13
0233azh_I_DT23_DA24BBwBB02440.48 BB02
0243azh_I_DA24_DC25miBBB13760.27 BB13
0253azh_I_DC25_DC26NANNANT00.56 BB13
0263azh_I_DC26_DA27B12BB04260.51 BB04
0273azh_I_DA27_DA28miBBB12750.44 BB12
0283azh_I_DA28_DA29BBwBB16600.43 BB16
0293azh_I_DA29_DA30BBBBB00420.27 BB00
0303azh_I_DA30_DG31BBwBB02400.29 BB02
0313azh_I_DG31_DT32BBBBB00630.18 BB00
0323azh_I_DT32_DG33miBBB13700.25 BB13
0333azh_I_DG33_DT34BBwBB02440.38 BB02
0343azh_I_DT34_DA35BBBBB00540.23 BB00
0353azh_I_DA35_DT36BBBBB00530.39 BB00
0363azh_I_DT36_DT37miBBB12400.36 BB12
0373azh_I_DT37_DT38NANNANT00.55 BB13
0383azh_I_DT38_DG39NANNANT00.86 BB00
0393azh_I_DG39_DG40BB2BB07670.31 BB07
0403azh_I_DG40_DA41miBBB13390.43 BB13
0413azh_I_DA41_DA42NANNANT00.70 BB02
0423azh_I_DA42_DA43miBBB13720.45 BB13
0433azh_I_DA43_DC44BBBBB00110.51 BB00
0443azh_I_DC44_DT45BBwBB02250.42 BB02
0453azh_I_DT45_DG46BBBBB00350.46 BB00
0463azh_I_DG46_DC47B12BB05380.38 BB05
0473azh_I_DC47_DT48NANNANT00.52 BB03
0483azh_I_DT48_DC49NANNANT00.67 AB02
0493azh_I_DC49_DC50BBwBB02500.38 BB02
0503azh_I_DC50_DA51BBBBB00630.24 BB00
0513azh_I_DA51_DT52BBwBB02510.23 BB02
0523azh_I_DT52_DC53miBBB13720.25 BB13
0533azh_I_DC53_DA54NANNANT00.43 BB16
0543azh_I_DA54_DA55NANNANT00.72 BB07
0553azh_I_DA55_DA56NANNANT00.57 BB12
0563azh_I_DA56_DA57BBBBB00360.39 BB00
0573azh_I_DA57_DG58miBBB12350.53 BB12
0583azh_I_DG58_DG59miBBB13240.49 BB13
0593azh_I_DG59_DC60BBwBB03650.34 BB03
0603azh_I_DC60_DA61BBBBB00720.32 BB00
0613azh_I_DA61_DT62BBwBB02630.20 BB02
0623azh_I_DT62_DG63NANNANT00.51 BB08
0633azh_I_DG63_DT64BBwBB03700.23 BB03
0643azh_I_DT64_DT65NANNANT00.55 BB13
0653azh_I_DT65_DC66NANNANT00.66 BB02
0663azh_I_DC66_DA67NANNANT00.75 BB13
0673azh_I_DA67_DG68NANNANT00.47 BB13
0683azh_I_DG68_DC69BBBBB00550.37 BB00
0693azh_I_DC69_DT70BBBBB00620.27 BB00
0703azh_I_DT70_DG71BBBBB00550.24 BB00
0713azh_I_DG71_DA72BBwBB02170.36 BB02
0723azh_I_DA72_DA73miBBB13610.34 BB13
0733azh_I_DA73_DT74NANNANT00.53 BB02
0743azh_I_DT74_DT75miBBB13740.23 BB13
0753azh_I_DT75_DC76BBBBB00130.50 BB00
0763azh_I_DC76_DA77NANNANT00.68 BB13
0773azh_I_DA77_DG78NANNANT00.67 BB03
0783azh_I_DG78_DC79BB2BB07500.25 BB07
0793azh_I_DC79_DT80BB2BB08730.36 BB08
0803azh_I_DT80_DG81BBBBB00720.37 BB00
0813azh_I_DG81_DA82BBBBB00580.24 BB00
0823azh_I_DA82_DA83BBwBB02440.18 BB02
0833azh_I_DA83_DC84BBwBB02530.25 BB02
0843azh_I_DC84_DA85BBBBB00650.26 BB00
0853azh_I_DA85_DT86BBBBB00660.19 BB00
0863azh_I_DT86_DG87NANNANT00.40 BB02
0873azh_I_DG87_DC88BBBBB00490.41 BB00
0883azh_I_DC88_DC89BBBBB00450.26 BB00
0893azh_I_DC89_DT90BB2BB08630.60 BB08
0903azh_I_DT90_DT91BBwBB03570.28 BB03
0913azh_I_DT91_DT92NANNANT00.60 BB02
0923azh_I_DT92_DT93BB2BB08460.32 BB08
0933azh_I_DT93_DG94NANNANT00.80 AB02
0943azh_I_DG94_DA95miBBB13690.23 BB13
0953azh_I_DA95_DT96NANNANT00.72 BB02
0963azh_I_DT96_DG97BBBBB00630.40 BB00
0973azh_I_DG97_DG98BBBBB00470.28 BB00
0983azh_I_DG98_DA99NANNANT00.70 BB08
0993azh_I_DA99_DG100NANNANT00.44 BB13
1003azh_I_DG100_DC101BBwBB11700.42 BB11
1013azh_I_DC101_DA102NANNANT00.47 BB13
1023azh_I_DA102_DG103NANNANT00.54 BB13
1033azh_I_DG103_DT104NANNANT00.49 BB03
1043azh_I_DT104_DT105miBBB13720.28 BB13
1053azh_I_DT105_DT106NANNANT00.54 BB13
1063azh_I_DT106_DC107BBwBB02470.64 BB02
1073azh_I_DC107_DC108BBBBB00470.49 BB00
1083azh_I_DC108_DA109B12BB04570.34 BB04
1093azh_I_DA109_DA110BBBBB00600.26 BB00
1103azh_I_DA110_DA111BBwBB02430.42 BB02
1113azh_I_DA111_DT112miBBB13360.39 BB13
1123azh_I_DT112_DA113BBBBB00100.56 BB00
1133azh_I_DA113_DC114BBwBB02630.25 BB02
1143azh_I_DC114_DA115miBBB13560.39 BB13
1153azh_I_DA115_DC116BBBBB00280.44 BB00
1163azh_I_DC116_DT117miBBB12150.49 BB12
1173azh_I_DT117_DT118BBwBB03690.32 BB03
1183azh_I_DT118_DT119BBBBB00490.25 BB00
1193azh_I_DT119_DT120BBBBB00380.44 BB00
1203azh_I_DT120_DG121B12BB04380.32 BB04
1213azh_I_DG121_DG122BBwBB11860.37 BB11
1223azh_I_DG122_DT123miBBB13330.44 BB13
1233azh_I_DT123_DA124BBwBB16800.23 BB16
1243azh_I_DA124_DG125miBBB13440.31 BB13
1253azh_I_DG125_DA126BBwBB03350.34 BB03
1263azh_I_DA126_DA127BBBBB00220.47 BB00
1273azh_I_DA127_DT128miBBB13390.58 BB13
1283azh_I_DT128_DC129NANNANT00.36 BB03
1293azh_I_DC129_DT130B12BB04100.38 BB04
1303azh_I_DT130_DG131BBwBB02370.37 BB02
1313azh_I_DG131_DC132BBBBB00180.52 BB00
1323azh_I_DC132_DA133BBBBB00190.48 BB00
1333azh_I_DA133_DG134NANNANT00.61 BB07
1343azh_I_DG134_DG135BBwBB03480.44 BB03
1353azh_I_DG135_DT136NANNANT00.82 BB02
1363azh_I_DT136_DG137NANNANT00.83 BB02
1373azh_I_DG137_DG138BBwBB11490.38 BB11
1383azh_I_DG138_DA139NANNANT00.42 BB13
1393azh_I_DA139_DT140BBwBB16200.58 BB16
1403azh_I_DT140_DA141BBBBB00670.23 BB00
1413azh_I_DA141_DT142BBBBB00600.23 BB00
1423azh_I_DT142_DT143BBwBB02410.18 BB02
1433azh_I_DT143_DG144miBBB13460.45 BB13
1443azh_I_DG144_DA145NANNANT00.41 BB03
1453azh_J_DT148_DC149miBBB13600.42 BB13
1463azh_J_DC149_DA150NANNANT00.80 BB02
1473azh_J_DA150_DA151NANNANT00.55 BB08
1483azh_J_DA151_DT152BBwBB02510.41 BB02
1493azh_J_DT152_DA153BBwBB02300.37 BB02
1503azh_J_DA153_DT154BBBBB00590.32 BB00
1513azh_J_DT154_DC155NANNANT00.36 BB13
1523azh_J_DC155_DC156BBBBB00360.37 BB00
1533azh_J_DC156_DA157BBwBB02380.29 BB02
1543azh_J_DA157_DC158BBBBB00690.36 BB00
1553azh_J_DC158_DC159miBBB12240.48 BB12
1563azh_J_DC159_DT160BBwBB16230.48 BB16
1573azh_J_DT160_DG161BBBBB00150.27 BB00
1583azh_J_DG161_DC162BB2BB07340.33 BB07
1593azh_J_DC162_DA163NANNANT00.28 BB00
1603azh_J_DA163_DG164NANNANT00.46 BB04
1613azh_J_DG164_DA165miBBB12320.37 BB12
1623azh_J_DA165_DT166BBwBB03550.36 BB03
1633azh_J_DT166_DT167miBBB13660.43 BB13
1643azh_J_DT167_DC168NANNANT00.99 BB12
1653azh_J_DC168_DT169BBwBB02490.52 BB02
1663azh_J_DT169_DA170BBBBB00500.30 BB00
1673azh_J_DA170_DC171BBwBB02400.41 BB02
1683azh_J_DC171_DC172BBwBB11400.35 BB11
1693azh_J_DC172_DA173BBwBB03460.38 BB03
1703azh_J_DA173_DA174NANNANT00.54 BB11
1713azh_J_DA174_DA175NANNANT00.64 BB02
1723azh_J_DA175_DA176BBBBB00480.36 BB00
1733azh_J_DA176_DG177BBwBB03370.45 BB03
1743azh_J_DG177_DT178BBwBB02400.34 BB02
1753azh_J_DT178_DG179miBBB13640.41 BB13
1763azh_J_DG179_DT180NANNANT00.54 BB02
1773azh_J_DT180_DA181BBBBB00420.27 BB00
1783azh_J_DA181_DT182miBBB13800.28 BB13
1793azh_J_DT182_DT183BBwBB02260.48 BB02
1803azh_J_DT183_DT184BBBBB00470.21 BB00
1813azh_J_DT184_DG185BB2BB07760.26 BB07
1823azh_J_DG185_DG186BBBBB00270.29 BB00
1833azh_J_DG186_DA187BB2BB07370.36 BB07
1843azh_J_DA187_DA188BBwBB03520.34 BB03
1853azh_J_DA188_DA189miBBB13220.50 BB13
1863azh_J_DA189_DC190BBwBB02210.61 BB02
1873azh_J_DC190_DT191miBBB13740.22 BB13
1883azh_J_DT191_DG192BBBBB00520.48 BB00
1893azh_J_DG192_DC193BBBBB00370.25 BB00
1903azh_J_DC193_DT194BB2BB07170.42 BB07
1913azh_J_DT194_DC195BBBBB00200.29 BB00
1923azh_J_DC195_DC196NANNANT00.33 BB07
1933azh_J_DC196_DA197BBBBB00660.21 BB00
1943azh_J_DA197_DT198BBwBB02700.18 BB02
1953azh_J_DT198_DC199miBBB12390.49 BB12
1963azh_J_DC199_DA200BBwBB02290.62 BB02
1973azh_J_DA200_DA201NANNANT00.39 BB13
1983azh_J_DA201_DA202NANNANT00.54 BB13
1993azh_J_DA202_DA203NANNANT00.51 BB11
2003azh_J_DA203_DG204NANNANT00.62 BB13
2013azh_J_DG204_DG205B12BB04100.50 BB04
2023azh_J_DG205_DC206BBwBB03530.38 BB03
2033azh_J_DC206_DA207B12BB05470.46 BB05
2043azh_J_DA207_DT208BBwBB02250.44 BB02
2053azh_J_DT208_DG209BBBBB00670.17 BB00
2063azh_J_DG209_DT210BBBBB00400.35 BB00
2073azh_J_DT210_DT211BBwBB02580.31 BB02
2083azh_J_DT211_DC212BBwBB02280.51 BB02
2093azh_J_DC212_DA213BBBBB00280.28 BB00
2103azh_J_DA213_DG214BB2BB07420.36 BB07
2113azh_J_DG214_DC215BBBBB00350.28 BB00
2123azh_J_DC215_DT216BB2BB07440.31 BB07
2133azh_J_DT216_DG217B12BB04660.28 BB04
2143azh_J_DG217_DA218BBwBB02680.22 BB02
2153azh_J_DA218_DA219BBwBB02370.30 BB02
2163azh_J_DA219_DT220miBBB13630.24 BB13
2173azh_J_DT220_DT221BBwBB02200.54 BB02
2183azh_J_DT221_DC222BBwBB02650.32 BB02
2193azh_J_DC222_DA223miBBB12260.58 BB12
2203azh_J_DA223_DG224NANNANT00.58 BB13
2213azh_J_DG224_DC225BBwBB02320.54 BB02
2223azh_J_DC225_DT226BBBBB00270.41 BB00
2233azh_J_DT226_DG227BB2BB08700.42 BB08
2243azh_J_DG227_DA228BBBBB00690.38 BB00
2253azh_J_DA228_DA229BBBBB00690.13 BB00
2263azh_J_DA229_DC230BBwBB02760.19 BB02
2273azh_J_DC230_DA231miBBB13680.48 BB13
2283azh_J_DA231_DT232NANNANT00.55 BB02
2293azh_J_DT232_DG233NANNANT00.32 BB02
2303azh_J_DG233_DC234miBBB12630.36 BB12
2313azh_J_DC234_DC235NANNANT00.57 BB15
2323azh_J_DC235_DT236BB2BB08600.53 BB08
2333azh_J_DT236_DT237BBwBB03480.26 BB03
2343azh_J_DT237_DT238BBwBB02400.46 BB02
2353azh_J_DT238_DT239BBwBB02580.23 BB02
2363azh_J_DT239_DG240BBBBB00330.28 BB00
2373azh_J_DG240_DA241NANNANT00.32 BB02
2383azh_J_DA241_DT242BBwBB02180.45 BB02
2393azh_J_DT242_DG243NANNANT00.55 BB13
2403azh_J_DG243_DG244BBBBB00360.39 BB00
2413azh_J_DG244_DA245miBBB12180.38 BB12
2423azh_J_DA245_DG246miBBB13520.47 BB13
2433azh_J_DG246_DC247NANNANT00.60 BB13
2443azh_J_DC247_DA248NANNANT00.63 BB11
2453azh_J_DA248_DG249BBwBB02720.30 BB02
2463azh_J_DG249_DT250NANNANT00.37 BB02
2473azh_J_DT250_DT251NANNANT00.44 BB13
2483azh_J_DT251_DT252NANNANT00.57 BB13
2493azh_J_DT252_DC253BBwBB02510.51 BB02
2503azh_J_DC253_DC254BBBBB00420.26 BB00
2513azh_J_DC254_DA255NANNANT00.62 BB08
2523azh_J_DA255_DA256BBBBB00370.38 BB00
2533azh_J_DA256_DA257BBwBB02680.30 BB02
2543azh_J_DA257_DT258BBwBB02550.28 BB02
2553azh_J_DT258_DA259NANNANT00.45 BB03
2563azh_J_DA259_DC260NANNANT00.52 BB02
2573azh_J_DC260_DA261BBwBB03680.31 BB03
2583azh_J_DA261_DC262BBBBB00490.23 BB00
2593azh_J_DC262_DT263NANNANT00.55 BB03
2603azh_J_DT263_DT264NANNANT00.49 AB02
2613azh_J_DT264_DT265BBwBB02420.43 BB02
2623azh_J_DT265_DT266BBBBB00230.41 BB00
2633azh_J_DT266_DG267BB2BB07510.31 BB07
2643azh_J_DG267_DG268BBBBB00620.34 BB00
2653azh_J_DG268_DT269BBBBB00660.30 BB00
2663azh_J_DT269_DA270miBBB13390.38 BB13
2673azh_J_DA270_DG271NANNANT00.73 BB02
2683azh_J_DG271_DA272BBwBB02520.35 BB02
2693azh_J_DA272_DA273BBwBB03570.43 BB03
2703azh_J_DA273_DT274BBBBB00280.42 BB00
2713azh_J_DT274_DC275miBBB12200.46 BB12
2723azh_J_DC275_DT276BBwBB16550.45 BB16
2733azh_J_DT276_DG277BB2BB07690.40 BB07
2743azh_J_DG277_DC278BBBBB00440.28 BB00
2753azh_J_DC278_DA279NANNANT00.69 BB13
2763azh_J_DA279_DG280BBBBB00130.84 BB00
2773azh_J_DG280_DG281NANNANT00.35 BB15
2783azh_J_DG281_DT282BBwBB02720.19 BB02
2793azh_J_DT282_DG283miBBB13810.28 BB13
2803azh_J_DG283_DG284NANNANT00.48 BB03
2813azh_J_DG284_DA285miBBB13540.45 BB13
2823azh_J_DA285_DT286NANNANT00.56 BB02
2833azh_J_DT286_DA287BBwBB02610.27 BB02
2843azh_J_DA287_DT288BBBBB00560.25 BB00
2853azh_J_DT288_DT289BBwBB02870.16 BB02
2863azh_J_DT289_DG290BBBBB00500.34 BB00
2873azh_J_DG290_DA291B12BB04540.28 BB04
2883azh_J_DA291_DT292NANNANT00.47 BB02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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