Conformers:
ABBIImiBZICOPNSYNN
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Structure of viral RNA polymerase complex 5
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 19 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 3avx_G_G2001_G2002 | AAA | AA00 | 65 | 0.34 |
| 02 | 3avx_G_G2002_G2003 | AAA | AA00 | 73 | 0.15 |
| 03 | 3avx_G_G2003_U2004 | AAA | AA08 | 77 | 0.16 |
| 04 | 3avx_G_U2004_C2005 | AAA | AA00 | 21 | 0.20 |
| 05 | 3avx_G_C2005_C2006 | AAA | AA04 | 81 | 0.20 |
| 06 | 3avx_G_C2006_A2007 | AAw | AA06 | 47 | 0.20 |
| 07 | 3avx_G_A2007_U2008 | NAN | NANT | 0 | 0.66 |
| 08 | 3avx_T_A2101_A2102 | NAN | NANT | 0 | 0.92 |
| 09 | 3avx_T_A2102_C2103 | NAN | NANT | 0 | 0.28 |
| 10 | 3avx_T_C2103_G2104 | AAA | AA00 | 69 | 0.13 |
| 11 | 3avx_T_G2104_A2105 | AAA | AA00 | 89 | 0.17 |
| 12 | 3avx_T_A2105_U2106 | AAA | AA00 | 73 | 0.21 |
| 13 | 3avx_T_U2106_G2107 | AAA | AA08 | 94 | 0.19 |
| 14 | 3avx_T_G2107_G2108 | AAA | AA00 | 95 | 0.10 |
| 15 | 3avx_T_G2108_A2109 | AAA | AA03 | 53 | 0.27 |
| 16 | 3avx_T_A2109_C2110 | NAN | NANT | 0 | 0.73 |
| 17 | 3avx_T_C2110_C2111 | AAA | AA03 | 80 | 0.25 |
| 18 | 3avx_T_C2111_C2112 | AAw | AA06 | 87 | 0.29 |
| 19 | 3avx_T_C2112_A2113 | NAN | NANT | 0 | 0.92 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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