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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
The human nucleosome structure containing the histone variant H3.2

Results of the assignment of 290 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0013av1_I_DA1_DT2BBwBB03600.38 BB03
0023av1_I_DT2_DC3NANNANT00.69 BB02
0033av1_I_DC3_DA4BBwBB11650.53 BB11
0043av1_I_DA4_DA5BBwBB02240.45 BB02
0053av1_I_DA5_DT6BBwBB02570.25 BB02
0063av1_I_DT6_DA7BBBBB00660.27 BB00
0073av1_I_DA7_DT8BBBBB00600.28 BB00
0083av1_I_DT8_DC9BBwBB02630.25 BB02
0093av1_I_DC9_DC10BBwBB02320.52 BB02
0103av1_I_DC10_DA11BBBBB00530.35 BB00
0113av1_I_DA11_DC12BBBBB00700.17 BB00
0123av1_I_DC12_DC13BBwBB02490.26 BB02
0133av1_I_DC13_DT14BBBBB00560.30 BB00
0143av1_I_DT14_DG15B12BB04300.47 BB04
0153av1_I_DG15_DC16BBBBB00430.29 BB00
0163av1_I_DC16_DA17BB2BB07690.36 BB07
0173av1_I_DA17_DG18BBBBB00580.26 BB00
0183av1_I_DG18_DA19NANNANT00.36 BB13
0193av1_I_DA19_DT20BBwBB02190.44 BB02
0203av1_I_DT20_DT21BBwBB02640.24 BB02
0213av1_I_DT21_DC22BBBBB00520.25 BB00
0223av1_I_DC22_DT23BBwBB02770.16 BB02
0233av1_I_DT23_DA24BBwBB02800.21 BB02
0243av1_I_DA24_DC25miBBB13880.28 BB13
0253av1_I_DC25_DC26BBBBB00100.52 BB00
0263av1_I_DC26_DA27BB2BB07490.41 BB07
0273av1_I_DA27_DA28BBBBB00370.21 BB00
0283av1_I_DA28_DA29BB2BB08660.26 BB08
0293av1_I_DA29_DA30BBBBB00360.34 BB00
0303av1_I_DA30_DG31BBBBB00670.23 BB00
0313av1_I_DG31_DT32BBwBB02780.18 BB02
0323av1_I_DT32_DG33BBBBB00660.23 BB00
0333av1_I_DG33_DT34miBBB13460.34 BB13
0343av1_I_DT34_DA35BBBBB00590.35 BB00
0353av1_I_DA35_DT36BBwBB03450.54 BB03
0363av1_I_DT36_DT37NANNANT00.58 BB02
0373av1_I_DT37_DT38BBwBB0270.49 BB02
0383av1_I_DT38_DG39BBBBB00410.36 BB00
0393av1_I_DG39_DG40BB2BB08480.62 BB08
0403av1_I_DG40_DA41BBwBB02240.66 BB02
0413av1_I_DA41_DA42BBwBB03520.32 BB03
0423av1_I_DA42_DA43BBwBB02320.43 BB02
0433av1_I_DA43_DC44BBwBB02690.25 BB02
0443av1_I_DC44_DT45miBBB13790.21 BB13
0453av1_I_DT45_DG46NANNANT00.77 BB11
0463av1_I_DG46_DC47NANNANT00.46 BB02
0473av1_I_DC47_DT48NANNANT00.70 BB11
0483av1_I_DT48_DC49BBwBB02200.38 BB02
0493av1_I_DC49_DC50NANNANT00.43 BB03
0503av1_I_DC50_DA51BBwBB02670.39 BB02
0513av1_I_DA51_DT52NANNANT00.53 BB02
0523av1_I_DT52_DC53BBwBB02710.39 BB02
0533av1_I_DC53_DA54NANNANT00.56 BB02
0543av1_I_DA54_DA55miBBB12420.49 BB12
0553av1_I_DA55_DA56NANNANT00.66 BB03
0563av1_I_DA56_DA57BBBBB00600.31 BB00
0573av1_I_DA57_DG58miBBB12430.51 BB12
0583av1_I_DG58_DG59BBBBB00450.51 BB00
0593av1_I_DG59_DC60BBBBB00530.39 BB00
0603av1_I_DC60_DA61BBBBB00670.28 BB00
0613av1_I_DA61_DT62BBwBB02810.17 BB02
0623av1_I_DT62_DG63BBBBB00720.30 BB00
0633av1_I_DG63_DT64BBwBB02500.29 BB02
0643av1_I_DT64_DT65BBwBB02690.25 BB02
0653av1_I_DT65_DC66BBBBB00430.23 BB00
0663av1_I_DC66_DA67BB2BB07720.27 BB07
0673av1_I_DA67_DG68BBBBB00430.25 BB00
0683av1_I_DG68_DC69BB2BB07380.32 BB07
0693av1_I_DC69_DT70BBBBB00730.27 BB00
0703av1_I_DT70_DG71BBwBB02720.28 BB02
0713av1_I_DG71_DA72BBBBB00580.30 BB00
0723av1_I_DA72_DA73BBBBB00590.15 BB00
0733av1_I_DA73_DT74BBwBB02660.20 BB02
0743av1_I_DT74_DT75BBwBB02760.18 BB02
0753av1_I_DT75_DC76BBwBB02270.42 BB02
0763av1_I_DC76_DA77BB2BB07420.29 BB07
0773av1_I_DA77_DG78BBBBB00450.22 BB00
0783av1_I_DG78_DC79BB2BB07670.34 BB07
0793av1_I_DC79_DT80BBBBB00580.27 BB00
0803av1_I_DT80_DG81B12BB04650.22 BB04
0813av1_I_DG81_DA82BBBBB00760.19 BB00
0823av1_I_DA82_DA83BBwBB02650.22 BB02
0833av1_I_DA83_DC84BBwBB02430.34 BB02
0843av1_I_DC84_DA85BBBBB00490.36 BB00
0853av1_I_DA85_DT86BBwBB02750.18 BB02
0863av1_I_DT86_DG87BBBBB00470.28 BB00
0873av1_I_DG87_DC88BB2BB07190.44 BB07
0883av1_I_DC88_DC89BBBBB00410.27 BB00
0893av1_I_DC89_DT90BB2BB07750.27 BB07
0903av1_I_DT90_DT91BBwBB02790.14 BB02
0913av1_I_DT91_DT92BBwBB02610.26 BB02
0923av1_I_DT92_DT93BBwBB02590.27 BB02
0933av1_I_DT93_DG94BBwBB02650.22 BB02
0943av1_I_DG94_DA95BBBBB00580.23 BB00
0953av1_I_DA95_DT96BBwBB02750.22 BB02
0963av1_I_DT96_DG97BBBBB00720.30 BB00
0973av1_I_DG97_DG98BBBBB00410.26 BB00
0983av1_I_DG98_DA99BB2BB07270.41 BB07
0993av1_I_DA99_DG100BBBBB00350.34 BB00
1003av1_I_DG100_DC101NANNANT00.43 BB08
1013av1_I_DC101_DA102BBwBB02600.53 BB02
1023av1_I_DA102_DG103BBBBB00630.31 BB00
1033av1_I_DG103_DT104BBwBB02830.17 BB02
1043av1_I_DT104_DT105BBwBB02750.24 BB02
1053av1_I_DT105_DT106BBBBB00550.25 BB00
1063av1_I_DT106_DC107NANNANT00.32 BB02
1073av1_I_DC107_DC108NANNANT00.42 BB08
1083av1_I_DC108_DA109B12BB04300.47 BB04
1093av1_I_DA109_DA110BBBBB00550.25 BB00
1103av1_I_DA110_DA111BBBBB00560.37 BB00
1113av1_I_DA111_DT112BBBBB00680.27 BB00
1123av1_I_DT112_DA113BBwBB02520.29 BB02
1133av1_I_DA113_DC114miBBB13540.27 BB13
1143av1_I_DC114_DA115BBBBB00400.57 BB00
1153av1_I_DA115_DC116BBwBB02490.29 BB02
1163av1_I_DC116_DT117BBBBB00690.21 BB00
1173av1_I_DT117_DT118BBwBB02860.17 BB02
1183av1_I_DT118_DT119BBBBB00590.26 BB00
1193av1_I_DT119_DT120B12BB04460.30 BB04
1203av1_I_DT120_DG121B12BB04550.27 BB04
1213av1_I_DG121_DG122B12BB04660.21 BB04
1223av1_I_DG122_DT123BBwBB02830.25 BB02
1233av1_I_DT123_DA124BBBBB00630.38 BB00
1243av1_I_DA124_DG125BBwBB11260.28 BB11
1253av1_I_DG125_DA126BBBBB00370.35 BB00
1263av1_I_DA126_DA127BBBBB00490.43 BB00
1273av1_I_DA127_DT128NANNANT00.52 BB13
1283av1_I_DT128_DC129BBwBB02310.42 BB02
1293av1_I_DC129_DT130B12BB04280.36 BB04
1303av1_I_DT130_DG131BBwBB02650.28 BB02
1313av1_I_DG131_DC132BBBBB00590.42 BB00
1323av1_I_DC132_DA133BBBBB00570.32 BB00
1333av1_I_DA133_DG134BBwBB02270.37 BB02
1343av1_I_DG134_DG135NANNANT00.37 BB02
1353av1_I_DG135_DT136miBBB13820.21 BB13
1363av1_I_DT136_DG137BBwBB02340.64 BB02
1373av1_I_DG137_DG138BBBBB00440.34 BB00
1383av1_I_DG138_DA139BBwBB11930.17 BB11
1393av1_I_DA139_DT140BBwBB02450.33 BB02
1403av1_I_DT140_DA141BBBBB00680.23 BB00
1413av1_I_DA141_DT142BBwBB02820.19 BB02
1423av1_I_DT142_DT143BBBBB00400.28 BB00
1433av1_I_DT143_DG144B12BB04480.19 BB04
1443av1_I_DG144_DA145BBBBB00640.18 BB00
1453av1_I_DA145_DT146NANNANT00.78 BB02
1463av1_J_DA147_DT148BBwBB03630.41 BB03
1473av1_J_DT148_DC149BBwBB02320.36 BB02
1483av1_J_DC149_DA150BBwBB02380.30 BB02
1493av1_J_DA150_DA151BBBBB00230.38 BB00
1503av1_J_DA151_DT152BBwBB03370.53 BB03
1513av1_J_DT152_DA153NANNANT00.65 BB02
1523av1_J_DA153_DT154BBwBB02710.25 BB02
1533av1_J_DT154_DC155BBwBB03810.21 BB03
1543av1_J_DC155_DC156BBwBB02330.41 BB02
1553av1_J_DC156_DA157B12BB05530.32 BB05
1563av1_J_DA157_DC158BBwBB02290.60 BB02
1573av1_J_DC158_DC159BBwBB02380.28 BB02
1583av1_J_DC159_DT160BBBBB00250.35 BB00
1593av1_J_DT160_DG161BBBBB00390.43 BB00
1603av1_J_DG161_DC162NANNANT00.40 BB02
1613av1_J_DC162_DA163NANNANT00.39 BB04
1623av1_J_DA163_DG164B12BB04390.38 BB04
1633av1_J_DG164_DA165NANNANT00.44 BB02
1643av1_J_DA165_DT166BBwBB02710.22 BB02
1653av1_J_DT166_DT167BBBBB00510.34 BB00
1663av1_J_DT167_DC168BBBBB00500.29 BB00
1673av1_J_DC168_DT169BBwBB02650.20 BB02
1683av1_J_DT169_DA170BBBBB00510.29 BB00
1693av1_J_DA170_DC171BBwBB02530.40 BB02
1703av1_J_DC171_DC172BBwBB03510.27 BB03
1713av1_J_DC172_DA173BBwBB11760.34 BB11
1723av1_J_DA173_DA174BBBBB00380.39 BB00
1733av1_J_DA174_DA175BB2BB08630.45 BB08
1743av1_J_DA175_DA176BBBBB00540.33 BB00
1753av1_J_DA176_DG177BBBBB00680.21 BB00
1763av1_J_DG177_DT178BBwBB02800.18 BB02
1773av1_J_DT178_DG179BBBBB00660.29 BB00
1783av1_J_DG179_DT180BBwBB02650.22 BB02
1793av1_J_DT180_DA181BBBBB00380.29 BB00
1803av1_J_DA181_DT182NANNANT00.63 BB02
1813av1_J_DT182_DT183BBwBB03780.20 BB03
1823av1_J_DT183_DT184BBwBB02770.31 BB02
1833av1_J_DT184_DG185BB2BB07580.34 BB07
1843av1_J_DG185_DG186BBBBB00400.35 BB00
1853av1_J_DG186_DA187BB2BB07620.36 BB07
1863av1_J_DA187_DA188BBBBB00670.32 BB00
1873av1_J_DA188_DA189BBBBB00550.23 BB00
1883av1_J_DA189_DC190miBBB13690.26 BB13
1893av1_J_DC190_DT191BBBBB00320.48 BB00
1903av1_J_DT191_DG192BB2BB07580.25 BB07
1913av1_J_DG192_DC193BBwBB02330.38 BB02
1923av1_J_DC193_DT194NANNANT00.47 BB08
1933av1_J_DT194_DC195BBwBB02260.52 BB02
1943av1_J_DC195_DC196BBBBB00400.38 BB00
1953av1_J_DC196_DA197BBBBB00680.22 BB00
1963av1_J_DA197_DT198BBwBB02760.14 BB02
1973av1_J_DT198_DC199BBwBB02700.25 BB02
1983av1_J_DC199_DA200BBBBB00580.23 BB00
1993av1_J_DA200_DA201NANNANT00.36 BB02
2003av1_J_DA201_DA202BBBBB00460.43 BB00
2013av1_J_DA202_DA203BBBBB00610.20 BB00
2023av1_J_DA203_DG204BBBBB00370.33 BB00
2033av1_J_DG204_DG205BB2BB07550.35 BB07
2043av1_J_DG205_DC206BBwBB02550.28 BB02
2053av1_J_DC206_DA207B12BB04190.26 BB04
2063av1_J_DA207_DT208BBwBB02870.15 BB02
2073av1_J_DT208_DG209BBwBB02790.33 BB02
2083av1_J_DG209_DT210BBBBB00240.24 BB00
2093av1_J_DT210_DT211BBwBB02630.27 BB02
2103av1_J_DT211_DC212BBwBB02500.38 BB02
2113av1_J_DC212_DA213BBBBB00350.29 BB00
2123av1_J_DA213_DG214BB2BB07560.36 BB07
2133av1_J_DG214_DC215BBBBB00470.27 BB00
2143av1_J_DC215_DT216BB2BB07500.26 BB07
2153av1_J_DT216_DG217BBBBB00350.38 BB00
2163av1_J_DG217_DA218BBBBB00660.20 BB00
2173av1_J_DA218_DA219BBwBB02500.27 BB02
2183av1_J_DA219_DT220BBwBB02680.24 BB02
2193av1_J_DT220_DT221BBBBB00500.22 BB00
2203av1_J_DT221_DC222BBBBB00550.18 BB00
2213av1_J_DC222_DA223B12BB04330.29 BB04
2223av1_J_DA223_DG224BB2BB07440.27 BB07
2233av1_J_DG224_DC225BBBBB00490.17 BB00
2243av1_J_DC225_DT226BB2BB07740.28 BB07
2253av1_J_DT226_DG227BBBBB00580.28 BB00
2263av1_J_DG227_DA228B12BB04540.30 BB04
2273av1_J_DA228_DA229BBBBB00790.14 BB00
2283av1_J_DA229_DC230BBwBB02720.16 BB02
2293av1_J_DC230_DA231B12BB04590.28 BB04
2303av1_J_DA231_DT232BBwBB02460.21 BB02
2313av1_J_DT232_DG233BBBBB00690.24 BB00
2323av1_J_DG233_DC234BBBBB00410.40 BB00
2333av1_J_DC234_DC235B12BB04410.29 BB04
2343av1_J_DC235_DT236BB2BB07760.19 BB07
2353av1_J_DT236_DT237BBBBB00620.32 BB00
2363av1_J_DT237_DT238BBwBB02710.19 BB02
2373av1_J_DT238_DT239NANNANT00.63 BB02
2383av1_J_DT239_DG240NANNANT00.69 BB07
2393av1_J_DG240_DA241miBBB13390.34 BB13
2403av1_J_DA241_DT242NANNANT00.69 BB02
2413av1_J_DT242_DG243BBwBB02140.34 BB02
2423av1_J_DG243_DG244BBBBB00720.24 BB00
2433av1_J_DG244_DA245BBBBB00480.28 BB00
2443av1_J_DA245_DG246BB2BB07680.28 BB07
2453av1_J_DG246_DC247BBwBB02420.22 BB02
2463av1_J_DC247_DA248BB2BB08180.51 BB08
2473av1_J_DA248_DG249BBwBB02750.41 BB02
2483av1_J_DG249_DT250BBwBB02680.20 BB02
2493av1_J_DT250_DT251BBwBB02760.22 BB02
2503av1_J_DT251_DT252NANNANT00.47 BB02
2513av1_J_DT252_DC253miBBB12660.25 BB12
2523av1_J_DC253_DC254NANNANT00.66 BB03
2533av1_J_DC254_DA255BB2BB07740.36 BB07
2543av1_J_DA255_DA256BBBBB00510.34 BB00
2553av1_J_DA256_DA257BBBBB00590.22 BB00
2563av1_J_DA257_DT258BBwBB02500.30 BB02
2573av1_J_DT258_DA259BBBBB00520.30 BB00
2583av1_J_DA259_DC260BBwBB02840.13 BB02
2593av1_J_DC260_DA261BBBBB00560.39 BB00
2603av1_J_DA261_DC262NANNANT00.48 BB02
2613av1_J_DC262_DT263BBwBB02580.39 BB02
2623av1_J_DT263_DT264miBBB13390.33 BB13
2633av1_J_DT264_DT265BBwBB02530.35 BB02
2643av1_J_DT265_DT266miBBB13870.23 BB13
2653av1_J_DT266_DG267NANNANT00.61 BB04
2663av1_J_DG267_DG268BBwBB02590.27 BB02
2673av1_J_DG268_DT269BBBBB00600.30 BB00
2683av1_J_DT269_DA270BBBBB00570.30 BB00
2693av1_J_DA270_DG271miBBB13510.27 BB13
2703av1_J_DG271_DA272NANNANT00.39 BB03
2713av1_J_DA272_DA273BBBBB00620.26 BB00
2723av1_J_DA273_DT274BBwBB02720.22 BB02
2733av1_J_DT274_DC275BBwBB02630.27 BB02
2743av1_J_DC275_DT276BBwBB02600.26 BB02
2753av1_J_DT276_DG277NANNANT00.53 BB08
2763av1_J_DG277_DC278BBBBB00300.39 BB00
2773av1_J_DC278_DA279BB2BB07680.33 BB07
2783av1_J_DA279_DG280BBwBB02180.32 BB02
2793av1_J_DG280_DG281BBwBB02170.31 BB02
2803av1_J_DG281_DT282BBwBB02680.27 BB02
2813av1_J_DT282_DG283BBwBB02830.22 BB02
2823av1_J_DG283_DG284BBwBB11720.33 BB11
2833av1_J_DG284_DA285BBBBB00570.34 BB00
2843av1_J_DA285_DT286BBwBB02480.22 BB02
2853av1_J_DT286_DA287miBBB12800.27 BB12
2863av1_J_DA287_DT288NANNANT00.60 BB02
2873av1_J_DT288_DT289BBwBB02700.21 BB02
2883av1_J_DT289_DG290BBBBB00570.35 BB00
2893av1_J_DG290_DA291B12BB04620.26 BB04
2903av1_J_DA291_DT292BBwBB02720.27 BB02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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