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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
The structure of the centromeric nucleosome containing CENP-A

Results of the assignment of 240 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0013an2_I_DA-60_DA-59BBBBB00600.37 BB00
0023an2_I_DA-59_DC-58B12BB04240.31 BB04
0033an2_I_DC-58_DG-57BB2BB07680.22 BB07
0043an2_I_DG-57_DG-56B12BB04730.33 BB04
0053an2_I_DG-56_DG-55BBBBB00680.37 BB00
0063an2_I_DG-55_DA-54miBBB13800.29 BB13
0073an2_I_DA-54_DT-53NANNANT00.44 BB15
0083an2_I_DT-53_DT-52BBwBB02420.28 BB02
0093an2_I_DT-52_DT-51BBBBB00890.20 BB00
0103an2_I_DT-51_DC-50BBwBB02650.23 BB02
0113an2_I_DC-50_DT-49BBwBB02720.22 BB02
0123an2_I_DT-49_DT-48NANNANT00.43 BB11
0133an2_I_DT-48_DC-47BBBBB00420.27 BB00
0143an2_I_DC-47_DA-46NANNANT00.46 BB04
0153an2_I_DA-46_DT-45BBBBB00560.28 BB00
0163an2_I_DT-45_DT-44BB2BB08430.49 BB08
0173an2_I_DT-44_DT-43BBBBB00330.49 BB00
0183an2_I_DT-43_DC-42B12BB04420.41 BB04
0193an2_I_DC-42_DA-41NANNANT00.55 BB02
0203an2_I_DA-41_DT-40BBBBB00710.31 BB00
0213an2_I_DT-40_DG-39miBBB12120.53 BB12
0223an2_I_DG-39_DC-38BBBBB00660.47 BB00
0233an2_I_DC-38_DT-37miBBB12550.47 BB12
0243an2_I_DT-37_DA-36NANNANT00.68 BB02
0253an2_I_DA-36_DG-35BBBBB00670.38 BB00
0263an2_I_DG-35_DA-34B12BB04450.35 BB04
0273an2_I_DA-34_DC-33BBwBB02740.30 BB02
0283an2_I_DC-33_DA-32miBBB10490.35 BB10
0293an2_I_DA-32_DG-31BBwBB11750.39 BB11
0303an2_I_DG-31_DA-30NANNANT00.66 BB02
0313an2_I_DA-30_DA-29NANNANT00.57 BB02
0323an2_I_DA-29_DG-28miBBB13730.37 BB13
0333an2_I_DG-28_DA-27NANNANT00.62 BB03
0343an2_I_DA-27_DA-26NANNANT00.60 BB02
0353an2_I_DA-26_DT-25BBwBB03200.54 BB03
0363an2_I_DT-25_DT-24BB2BB07280.36 BB07
0373an2_I_DT-24_DC-23B12BB04730.22 BB04
0383an2_I_DC-23_DT-22NANNANT00.35 BB02
0393an2_I_DT-22_DC-21NANNANT00.69 BB02
0403an2_I_DC-21_DA-20BBwBB02820.29 BB02
0413an2_I_DA-20_DG-19NANNANT00.47 BB02
0423an2_I_DG-19_DT-18miBBB12870.25 BB12
0433an2_I_DT-18_DA-17NANNANT00.70 BB13
0443an2_I_DA-17_DA-16BBBBB00710.31 BB00
0453an2_I_DA-16_DC-15miBBB12140.32 BB12
0463an2_I_DC-15_DT-14NANNANT00.34 BB10
0473an2_I_DT-14_DT-13B12BB04410.33 BB04
0483an2_I_DT-13_DC-12BBBBB00110.45 BB00
0493an2_I_DC-12_DT-11NANNANT00.49 BB02
0503an2_I_DT-11_DT-10NANNANT00.72 BB17
0513an2_I_DT-10_DT-9NANNANT00.77 BB11
0523an2_I_DT-9_DG-8NANNANT00.80 BB02
0533an2_I_DG-8_DT-7BBBBB00560.41 BB00
0543an2_I_DT-7_DG-6BB2BB07380.45 BB07
0553an2_I_DG-6_DC-5BBBBB00110.39 BB00
0563an2_I_DC-5_DT-4BB2BB07170.42 BB07
0573an2_I_DT-4_DG-3BBBBB00230.38 BB00
0583an2_I_DG-3_DG-2BBwBB02310.35 BB02
0593an2_I_DG-2_DT-1NANNANT00.34 BB10
0603an2_I_DT-1_DA0miBBB10590.43 BB10
0613an2_I_DA0_DA1BBwBB02600.26 BB02
0623an2_I_DA1_DC2BBwBB02540.28 BB02
0633an2_I_DC2_DC3BBBBB00510.41 BB00
0643an2_I_DC3_DA4BBBBB00650.23 BB00
0653an2_I_DA4_DG5BBwBB02350.51 BB02
0663an2_I_DG5_DC6B12BB04450.34 BB04
0673an2_I_DC6_DA7BBBBB00480.29 BB00
0683an2_I_DA7_DC8B12BB04440.26 BB04
0693an2_I_DC8_DA9NANNANT00.49 BB00
0703an2_I_DA9_DA10BB2BB08730.51 BB08
0713an2_I_DA10_DA11NANNANT00.50 BB10
0723an2_I_DA11_DG12NANNANT00.58 BB10
0733an2_I_DG12_DA13NANNANT00.42 BB02
0743an2_I_DA13_DA14B12BB04380.54 BB04
0753an2_I_DA14_DG15B12BB04460.33 BB04
0763an2_I_DG15_DT16BBBBB00230.44 BB00
0773an2_I_DT16_DT17BB2BB07520.31 BB07
0783an2_I_DT17_DA18BBwBB02320.28 BB02
0793an2_I_DA18_DC19NANNANT00.56 BB02
0803an2_I_DC19_DT20BBwBB02330.46 BB02
0813an2_I_DT20_DG21NANNANT00.51 BB02
0823an2_I_DG21_DA22BBBBB00380.33 BB00
0833an2_I_DA22_DG23NANNANT00.69 BB02
0843an2_I_DG23_DA24NANNANT00.55 BB10
0853an2_I_DA24_DA25BBBBB00180.42 BB00
0863an2_I_DA25_DT26BB2BB07580.24 BB07
0873an2_I_DT26_DT27BBwBB02380.27 BB02
0883an2_I_DT27_DC28BBwBB11480.50 BB11
0893an2_I_DC28_DT29BBwBB02460.58 BB02
0903an2_I_DT29_DT30BBBBB00630.27 BB00
0913an2_I_DT30_DC31BBwBB02530.18 BB02
0923an2_I_DC31_DT32BBwBB02740.31 BB02
0933an2_I_DT32_DG33BBBBB00230.38 BB00
0943an2_I_DG33_DT34BBBBB00100.65 BB00
0953an2_I_DT34_DC35BBwBB0280.57 BB02
0963an2_I_DC35_DT36BBBBB00340.56 BB00
0973an2_I_DT36_DA37BBBBB00190.41 BB00
0983an2_I_DA37_DG38BB2BB07480.35 BB07
0993an2_I_DG38_DC39BBBBB00570.34 BB00
1003an2_I_DC39_DA40BBwBB02470.27 BB02
1013an2_I_DA40_DT41miBBB13360.36 BB13
1023an2_I_DT41_DG42BBwBB16550.25 BB16
1033an2_I_DG42_DA43NANNANT00.43 BB02
1043an2_I_DA43_DA44B12BB04540.29 BB04
1053an2_I_DA44_DA45BBwBB02370.23 BB02
1063an2_I_DA45_DT46BBBBB00300.45 BB00
1073an2_I_DT46_DG47BBBBB00230.39 BB00
1083an2_I_DG47_DA48BBBBB00470.32 BB00
1093an2_I_DA48_DA49BBBBB00460.44 BB00
1103an2_I_DA49_DG50BBBBB00530.32 BB00
1113an2_I_DG50_DA51BBBBB00350.43 BB00
1123an2_I_DA51_DA52BBwBB11430.32 BB11
1133an2_I_DA52_DA53BBBBB00440.36 BB00
1143an2_I_DA53_DT54BBwBB02130.49 BB02
1153an2_I_DT54_DC55BBwBB03410.47 BB03
1163an2_I_DC55_DC56BBwBB02640.34 BB02
1173an2_I_DC56_DC57B12BB04370.40 BB04
1183an2_I_DC57_DG58BBwBB11850.40 BB11
1193an2_I_DG58_DT59BBBBB00470.29 BB00
1203an2_I_DT59_DT60B12BB04190.30 BB04
1213an2_J_DA-60_DA-59B12BB04690.30 BB04
1223an2_J_DA-59_DC-58BBwBB02460.34 BB02
1233an2_J_DC-58_DG-57BBBBB00480.41 BB00
1243an2_J_DG-57_DG-56BBBBB00620.29 BB00
1253an2_J_DG-56_DG-55NANNANT00.63 BB08
1263an2_J_DG-55_DA-54BBwBB02320.36 BB02
1273an2_J_DA-54_DT-53BBBBB00480.42 BB00
1283an2_J_DT-53_DT-52BBwBB02740.21 BB02
1293an2_J_DT-52_DT-51BBwBB02370.36 BB02
1303an2_J_DT-51_DC-50BBBBB00500.43 BB00
1313an2_J_DC-50_DT-49NANNANT00.45 BB02
1323an2_J_DT-49_DT-48BBwBB03410.49 BB03
1333an2_J_DT-48_DC-47NANNANT00.70 BB11
1343an2_J_DC-47_DA-46BBwBB02630.33 BB02
1353an2_J_DA-46_DT-45BBBBB00480.37 BB00
1363an2_J_DT-45_DT-44BBBBB00600.35 BB00
1373an2_J_DT-44_DT-43B12BB04610.30 BB04
1383an2_J_DT-43_DC-42BBwBB02490.16 BB02
1393an2_J_DC-42_DA-41BBBBB00640.39 BB00
1403an2_J_DA-41_DT-40NANNANT00.70 BB02
1413an2_J_DT-40_DG-39BBBBB00660.38 BB00
1423an2_J_DG-39_DC-38BBwBB02460.24 BB02
1433an2_J_DC-38_DT-37NANNANT00.62 BB11
1443an2_J_DT-37_DA-36BBwBB02630.39 BB02
1453an2_J_DA-36_DG-35BB2BB07620.26 BB07
1463an2_J_DG-35_DA-34BBBBB00590.34 BB00
1473an2_J_DA-34_DC-33BBBBB00630.30 BB00
1483an2_J_DC-33_DA-32NANNANT00.52 BB04
1493an2_J_DA-32_DG-31B12BB04410.19 BB04
1503an2_J_DG-31_DA-30NANNANT00.48 BB03
1513an2_J_DA-30_DA-29BBBBB00300.49 BB00
1523an2_J_DA-29_DG-28B12BB04680.36 BB04
1533an2_J_DG-28_DA-27BBwBB02310.42 BB02
1543an2_J_DA-27_DA-26NANNANT00.61 BB08
1553an2_J_DA-26_DT-25NANNANT00.73 BB02
1563an2_J_DT-25_DT-24BBBBB00300.57 BB00
1573an2_J_DT-24_DC-23BBBBB00550.37 BB00
1583an2_J_DC-23_DT-22BBwBB02610.22 BB02
1593an2_J_DT-22_DC-21B12BB04400.29 BB04
1603an2_J_DC-21_DA-20BBBBB00420.29 BB00
1613an2_J_DA-20_DG-19miBBB10520.34 BB10
1623an2_J_DG-19_DT-18NANNANT00.38 BB10
1633an2_J_DT-18_DA-17NANNANT00.68 BB00
1643an2_J_DA-17_DA-16NANNANT00.49 BB17
1653an2_J_DA-16_DC-15NANNANT00.76 BB07
1663an2_J_DC-15_DT-14BBwBB02540.26 BB02
1673an2_J_DT-14_DT-13BBBBB00690.35 BB00
1683an2_J_DT-13_DC-12BBwBB02420.25 BB02
1693an2_J_DC-12_DT-11BBBBB00160.39 BB00
1703an2_J_DT-11_DT-10NANNANT00.34 BB00
1713an2_J_DT-10_DT-9B12BB04520.30 BB04
1723an2_J_DT-9_DG-8BBwBB02810.16 BB02
1733an2_J_DG-8_DT-7B12BB04570.42 BB04
1743an2_J_DT-7_DG-6BB2BB07610.17 BB07
1753an2_J_DG-6_DC-5B12BB04490.41 BB04
1763an2_J_DC-5_DT-4B12BB04650.20 BB04
1773an2_J_DT-4_DG-3B12BB04900.23 BB04
1783an2_J_DG-3_DG-2BBBBB00560.39 BB00
1793an2_J_DG-2_DT-1NANNANT00.41 BB02
1803an2_J_DT-1_DA0BBwBB02210.48 BB02
1813an2_J_DA0_DA1NANNANT00.51 BB02
1823an2_J_DA1_DC2BBBBB00610.25 BB00
1833an2_J_DC2_DC3NANNANT00.39 BB00
1843an2_J_DC3_DA4BB2BB07550.38 BB07
1853an2_J_DA4_DG5NANNANT00.41 BB02
1863an2_J_DG5_DC6BBBBB00430.42 BB00
1873an2_J_DC6_DA7BBBBB00220.39 BB00
1883an2_J_DA7_DC8B12BB04480.39 BB04
1893an2_J_DC8_DA9BBBBB00690.30 BB00
1903an2_J_DA9_DA10NANNANT00.46 BB02
1913an2_J_DA10_DA11BBwBB16420.49 BB16
1923an2_J_DA11_DG12BBwBB02200.23 BB02
1933an2_J_DG12_DA13BBBBB00520.32 BB00
1943an2_J_DA13_DA14BBBBB00350.24 BB00
1953an2_J_DA14_DG15NANNANT00.53 BB07
1963an2_J_DG15_DT16BBBBB00520.32 BB00
1973an2_J_DT16_DT17B12BB04490.36 BB04
1983an2_J_DT17_DA18BBwBB02690.22 BB02
1993an2_J_DA18_DC19BBwBB02320.48 BB02
2003an2_J_DC19_DT20NANNANT00.75 BB10
2013an2_J_DT20_DG21NANNANT00.48 BB12
2023an2_J_DG21_DA22NANNANT00.73 BB02
2033an2_J_DA22_DG23NANNANT00.44 BB15
2043an2_J_DG23_DA24BBBBB00340.51 BB00
2053an2_J_DA24_DA25BBwBB02230.36 BB02
2063an2_J_DA25_DT26NANNANT00.36 BB07
2073an2_J_DT26_DT27NANNANT00.34 BB02
2083an2_J_DT27_DC28BB2BB08780.27 BB08
2093an2_J_DC28_DT29BBwBB02590.34 BB02
2103an2_J_DT29_DT30NANNANT00.46 BB02
2113an2_J_DT30_DC31BBwBB02660.41 BB02
2123an2_J_DC31_DT32BBwBB02290.51 BB02
2133an2_J_DT32_DG33miBBB13480.35 BB13
2143an2_J_DG33_DT34BBwBB11380.48 BB11
2153an2_J_DT34_DC35BBBBB00570.36 BB00
2163an2_J_DC35_DT36BBwBB02640.35 BB02
2173an2_J_DT36_DA37BBBBB00420.34 BB00
2183an2_J_DA37_DG38B12BB04550.22 BB04
2193an2_J_DG38_DC39B12BB04500.30 BB04
2203an2_J_DC39_DA40BBwBB02570.23 BB02
2213an2_J_DA40_DT41BBwBB02340.48 BB02
2223an2_J_DT41_DG42BBwBB02310.40 BB02
2233an2_J_DG42_DA43NANNANT00.66 BB02
2243an2_J_DA43_DA44miBBB12550.34 BB12
2253an2_J_DA44_DA45BBwBB02190.49 BB02
2263an2_J_DA45_DT46BBwBB03220.47 BB03
2273an2_J_DT46_DG47B12BB04240.47 BB04
2283an2_J_DG47_DA48BBwBB02720.18 BB02
2293an2_J_DA48_DA49BBBBB00550.46 BB00
2303an2_J_DA49_DG50BBBBB00240.40 BB00
2313an2_J_DG50_DA51miBBB13650.31 BB13
2323an2_J_DA51_DA52miBBB13220.52 BB13
2333an2_J_DA52_DA53BBwBB02120.58 BB02
2343an2_J_DA53_DT54BBwBB11760.28 BB11
2353an2_J_DT54_DC55BBwBB02630.38 BB02
2363an2_J_DC55_DC56BBwBB02360.31 BB02
2373an2_J_DC56_DC57BBwBB11520.48 BB11
2383an2_J_DC57_DG58BBBBB00290.63 BB00
2393an2_J_DG58_DT59NANNANT00.57 BB07
2403an2_J_DT59_DT60BBwBB02540.27 BB02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

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