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Conformers: ABBIImiBZICOPNSYNN
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Crystal structure of Pyrococcus horikoshii arginyl-tRNA synthetase complexed with tRNA(Arg)

Results of the assignment of 76 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012zuf_B_G901_G902AAwAA01560.24 AA01
022zuf_B_G902_A903AAAAA08920.14 AA08
032zuf_B_A903_C904AAAAA00770.22 AA00
042zuf_B_C904_C905AAAAA00810.20 AA00
052zuf_B_C905_G906AAwAA01470.31 AA01
062zuf_B_G906_G907AAAAA08510.26 AA08
072zuf_B_G907_U908NANNANT01.68 OP16
082zuf_B_U908_A909NANNANT01.00 IC07
092zuf_B_A909_G910NANNANT01.44 OP26
102zuf_B_G910_C911AAAAA00690.23 AA00
112zuf_B_C911_C912AAAAA00890.23 AA00
122zuf_B_C912_U913AAAAA00810.32 AA00
132zuf_B_U913_A914AAuAA12790.29 AA12
142zuf_B_A914_G915AAAAA00340.38 AA00
152zuf_B_G915_C916A-BAB04650.34 AB04
162zuf_B_C916_C917OPNOP12330.28 OP12
172zuf_B_A917.A_G918NANNANT01.11 OP29
182zuf_B_C917_A917.ANANNANT01.50 BA16
192zuf_B_G918_G919NANNANT00.79 BB03
202zuf_B_G919_A920NANNANT01.30 AA07
212zuf_B_A920_C920.ANANNANT01.54 AA13
222zuf_B_C920.A_A921NANNANT01.70 OP06
232zuf_B_A921_G922NANNANT01.10 AA11
242zuf_B_G922_G923NANNANT00.74 AA11
252zuf_B_G923_G924AAAAA00420.30 AA00
262zuf_B_G924_C925AAAAA00810.22 AA00
272zuf_B_C925_G926AAAAA00560.35 AA00
282zuf_B_G926_G927AAAAA00520.31 AA00
292zuf_B_G927_C928AAAAA00910.12 AA00
302zuf_B_C928_G929AAAAA00630.20 AA00
312zuf_B_G929_G930AAwAA01680.28 AA01
322zuf_B_G930_C931AAAAA00510.32 AA00
332zuf_B_C931_C932NANNANT00.94 IC07
342zuf_B_C932_U933NANNANT02.22 OPS1
352zuf_B_U933_C934NANNANT01.90 ZZ02
362zuf_B_C934_C935NANNANT01.03 AA07
372zuf_B_C935_U936NANNANT00.67 OP05
382zuf_B_U936_A937NANNANT00.69 OP29
392zuf_B_A937_A938NANNANT00.77 OP21
402zuf_B_A938_G939OPNOP11540.35 OP11
412zuf_B_G939_C940AAAAA00960.12 AA00
422zuf_B_C940_C941AAAAA00860.16 AA00
432zuf_B_C941_G942AAAAA00830.12 AA00
442zuf_B_G942_C943AAAAA00820.22 AA00
452zuf_B_C943_A944AAAAA00880.17 AA00
462zuf_B_A944_G945AAAAA00860.22 AA00
472zuf_B_G945_G946NANNANT00.30 IC01
482zuf_B_G946_U947NANNANT01.48 OP17
492zuf_B_U947_C948NANNANT02.08 OP01
502zuf_B_C948_C949NANNANT01.22 OP05
512zuf_B_C949_G950AAAAA00640.19 AA00
522zuf_B_G950_G951AAAAA00710.18 AA00
532zuf_B_G951_G952AAwAA01790.26 AA01
542zuf_B_G952_G953AAAAA08660.31 AA08
552zuf_B_G953_U954AAAAA00960.15 AA00
562zuf_B_U954_U955AAAAA08740.22 AA08
572zuf_B_U955_C956OPNOP04890.14 OP04
582zuf_B_C956_A957AAAAA00690.35 AA00
592zuf_B_A957_A958ICLIC01880.37 IC01
602zuf_B_A958_A959OPNOP25800.20 OP25
612zuf_B_A959_U960A-BAB05570.45 AB05
622zuf_B_U960_C961OPNOP12870.13 OP12
632zuf_B_C961_C962AAAAA00770.20 AA00
642zuf_B_C962_C963AAAAA00920.16 AA00
652zuf_B_C963_C964AAAAA00910.19 AA00
662zuf_B_C964_G965AAwAA01950.10 AA01
672zuf_B_G965_C966AAAAA00720.20 AA00
682zuf_B_C966_C967AAwAA01740.29 AA01
692zuf_B_C967_G968AAAAA08720.24 AA08
702zuf_B_G968_G969AAAAA00870.15 AA00
712zuf_B_G969_U970AAAAA00870.29 AA00
722zuf_B_U970_C971AAAAA00850.21 AA00
732zuf_B_C971_C972AAAAA00870.14 AA00
742zuf_B_C972_G.A973AAAAA00490.31 AA00
752zuf_B_C972_G.B973NANNANT01.07 IC07
762zuf_B_G.B973_C.B974NANNANT00.99 OP06

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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