Conformers:
ABBIImiBZICOPNSYNN
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Structure of the SCL:E47 complex bound to DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 20 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2ypb_E_DA4_DC5 | BBB | BB00 | 41 | 0.27 |
| 02 | 2ypb_E_DC5_DC6 | BBB | BB01 | 67 | 0.16 |
| 03 | 2ypb_E_DC6_DA7 | BBB | BB00 | 68 | 0.32 |
| 04 | 2ypb_E_DA7_DT8 | B-A | BA01 | 75 | 0.17 |
| 05 | 2ypb_E_DT8_DC9 | A-B | AB01 | 57 | 0.33 |
| 06 | 2ypb_E_DC9_DT10 | B-A | BA05 | 93 | 0.16 |
| 07 | 2ypb_E_DT10_DG11 | BBB | BB00 | 22 | 0.36 |
| 08 | 2ypb_E_DG11_DT12 | BBB | BB00 | 60 | 0.20 |
| 09 | 2ypb_E_DT12_DT13 | BBB | BB00 | 41 | 0.21 |
| 10 | 2ypb_E_DT13_DC14 | B-A | BA01 | 10 | 0.23 |
| 11 | 2ypb_F_DG22_DA23 | BBB | BB00 | 48 | 0.27 |
| 12 | 2ypb_F_DA23_DA24 | BBB | BB00 | 67 | 0.22 |
| 13 | 2ypb_F_DA24_DC25 | BBB | BB01 | 71 | 0.28 |
| 14 | 2ypb_F_DC25_DA26 | BBB | BB00 | 59 | 0.22 |
| 15 | 2ypb_F_DA26_DG27 | BBB | BB00 | 64 | 0.31 |
| 16 | 2ypb_F_DG27_DA28 | BBB | BB00 | 85 | 0.15 |
| 17 | 2ypb_F_DA28_DT29 | BBB | BB00 | 77 | 0.23 |
| 18 | 2ypb_F_DT29_DG30 | B12 | BB04 | 60 | 0.18 |
| 19 | 2ypb_F_DG30_DG31 | miB | BB10 | 79 | 0.25 |
| 20 | 2ypb_F_DG31_DT32 | NAN | NANT | 0 | 0.36 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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