Conformers:
ABBIImiBZICOPNSYNN
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A specific and modular binding code for cytosine recognition in PUF domains
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 18 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2yjy_C_A-1_U0 | NAN | NANT | 0 | 1.80 |
| 02 | 2yjy_C_U0_U1 | NAN | NANT | 0 | 1.87 |
| 03 | 2yjy_C_U1_G2 | NAN | NANT | 0 | 0.62 |
| 04 | 2yjy_C_G2_C3 | NAN | NANT | 0 | 0.65 |
| 05 | 2yjy_C_C3_A4 | NAN | NANT | 0 | 0.90 |
| 06 | 2yjy_C_A4_U5 | NAN | NANT | 0 | 0.45 |
| 07 | 2yjy_C_U5_A6 | NAN | NANT | 0 | 1.61 |
| 08 | 2yjy_C_A6_U7 | NAN | NANT | 0 | 0.60 |
| 09 | 2yjy_C_U7_A8 | NAN | NANT | 0 | 0.83 |
| 10 | 2yjy_D_A-1_U0 | NAN | NANT | 0 | 1.80 |
| 11 | 2yjy_D_U0_U1 | NAN | NANT | 0 | 1.33 |
| 12 | 2yjy_D_U1_G2 | NAN | NANT | 0 | 0.63 |
| 13 | 2yjy_D_G2_C3 | NAN | NANT | 0 | 0.51 |
| 14 | 2yjy_D_C3_A4 | NAN | NANT | 0 | 0.71 |
| 15 | 2yjy_D_A4_U5 | NAN | NANT | 0 | 0.58 |
| 16 | 2yjy_D_U5_A6 | NAN | NANT | 0 | 1.24 |
| 17 | 2yjy_D_A6_U7 | NAN | NANT | 0 | 0.34 |
| 18 | 2yjy_D_U7_A8 | NAN | NANT | 0 | 0.49 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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