Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
A processed non-coding RNA regulates a bacterial antiviral system
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 35 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2xdb_G_A-3_U-2 | AAA | AA00 | 23 | 0.45 |
| 02 | 2xdb_G_U-2_U-1 | NAN | NANT | 0 | 0.45 |
| 03 | 2xdb_G_U-1_C0 | NAN | NANT | 0 | 1.68 |
| 04 | 2xdb_G_C0_A1 | NAN | NANT | 0 | 0.77 |
| 05 | 2xdb_G_A1_G2 | AAA | AA08 | 81 | 0.15 |
| 06 | 2xdb_G_G2_G3 | AAA | AA00 | 67 | 0.34 |
| 07 | 2xdb_G_G3_U4 | AAA | AA00 | 42 | 0.27 |
| 08 | 2xdb_G_U4_G5 | NAN | NANT | 0 | 0.41 |
| 09 | 2xdb_G_G5_A6 | NAN | NANT | 0 | 1.10 |
| 10 | 2xdb_G_A6_U7 | OPN | OPS1 | 64 | 0.24 |
| 11 | 2xdb_G_U7_U8 | NAN | NANT | 0 | 0.49 |
| 12 | 2xdb_G_U8_U9 | OPN | OP26 | 54 | 0.20 |
| 13 | 2xdb_G_U9_G10 | AAA | AA00 | 81 | 0.16 |
| 14 | 2xdb_G_G10_C11 | AAA | AA08 | 89 | 0.20 |
| 15 | 2xdb_G_C11_U12 | AAA | AA00 | 67 | 0.28 |
| 16 | 2xdb_G_U12_A13 | AAA | AA00 | 83 | 0.14 |
| 17 | 2xdb_G_A13_C14 | AAA | AA00 | 79 | 0.25 |
| 18 | 2xdb_G_C14_C15 | AAA | AA00 | 57 | 0.23 |
| 19 | 2xdb_G_C15_U16 | AAA | AA00 | 43 | 0.25 |
| 20 | 2xdb_G_U16_U17 | NAN | NANT | 0 | 1.42 |
| 21 | 2xdb_G_U17_U18 | NAN | NANT | 0 | 1.17 |
| 22 | 2xdb_G_U18_A19 | NAN | NANT | 0 | 0.92 |
| 23 | 2xdb_G_A19_A20 | AAA | AA02 | 80 | 0.14 |
| 24 | 2xdb_G_A20_G21 | NAN | NANT | 0 | 0.81 |
| 25 | 2xdb_G_G21_U22 | OPN | OP15 | 89 | 0.31 |
| 26 | 2xdb_G_U22_G23 | AAA | AA00 | 89 | 0.18 |
| 27 | 2xdb_G_G23_C24 | AAA | AA00 | 92 | 0.13 |
| 28 | 2xdb_G_C24_A25 | AAw | AA01 | 69 | 0.14 |
| 29 | 2xdb_G_A25_G26 | AAA | AA08 | 86 | 0.31 |
| 30 | 2xdb_G_G26_C27 | AAA | AA00 | 66 | 0.24 |
| 31 | 2xdb_G_C27_U28 | AAA | AA00 | 76 | 0.34 |
| 32 | 2xdb_G_U28_A29 | A-B | AB05 | 50 | 0.43 |
| 33 | 2xdb_G_A29_G30 | ZZZ | ZZ2S | 9 | 0.21 |
| 34 | 2xdb_G_G30_A31 | NAN | NANT | 0 | 1.11 |
| 35 | 2xdb_G_A31_A2332 | NAN | NANT | 0 | 0.88 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
Show
| Color by conformation group (pyramids) | |
|---|---|
| group | |||||||||
| visible |
| Color by NtC (balls) |
|---|
| A | ||||
|---|---|---|---|---|
| A-B | ||||
|---|---|---|---|---|
| B-A | ||||
|---|---|---|---|---|
| B | ||||
|---|---|---|---|---|
| IC | ||||
|---|---|---|---|---|
| OPN | ||||
|---|---|---|---|---|
| Z | ||||
|---|---|---|---|---|
| N | ||||
|---|---|---|---|---|