Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
The 2.1A crystal structure of S. aureus Gyrase complex with GSK299423 and DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 35 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2xcs_E_DG2_DC3 | B-A | BA17 | 95 | 0.23 |
| 02 | 2xcs_E_DC3_DC4 | AAA | AA02 | 61 | 0.30 |
| 03 | 2xcs_E_DC4_DG5 | NAN | NANT | 0 | 0.40 |
| 04 | 2xcs_E_DG5_DT6 | BB2 | BB08 | 80 | 0.34 |
| 05 | 2xcs_E_DT6_DA7 | B-A | BA10 | 30 | 0.42 |
| 06 | 2xcs_E_DA7_DG8 | AAA | AA00 | 62 | 0.26 |
| 07 | 2xcs_E_DG8_DG9 | AAA | AA00 | 81 | 0.25 |
| 08 | 2xcs_E_DG9_DG10 | NAN | NANT | 0 | 0.36 |
| 09 | 2xcs_E_DG10_DC11 | NAN | NANT | 0 | 0.77 |
| 10 | 2xcs_E_DC11_DC12 | BBB | BB00 | 87 | 0.27 |
| 11 | 2xcs_E_DC12_DC13 | NAN | NANT | 0 | 0.45 |
| 12 | 2xcs_E_DC13_DT14 | AAA | AA00 | 46 | 0.24 |
| 13 | 2xcs_E_DT14_DA15 | A-B | AB04 | 73 | 0.29 |
| 14 | 2xcs_E_DA15_DC16 | B-A | BA05 | 54 | 0.32 |
| 15 | 2xcs_E_DC16_DG17 | NAN | NANT | 0 | 0.42 |
| 16 | 2xcs_E_DG17_DG18 | BBB | BB00 | 91 | 0.14 |
| 17 | 2xcs_E_DG18_DC19 | B-A | BA08 | 46 | 0.30 |
| 18 | 2xcs_E_DC19_DT20 | AAA | AA00 | 57 | 0.35 |
| 19 | 2xcs_F_DG2_DC3 | B-A | BA08 | 89 | 0.27 |
| 20 | 2xcs_F_DC3_DC4 | AAA | AA02 | 63 | 0.33 |
| 21 | 2xcs_F_DC4_DG5 | A-B | AB01 | 27 | 0.49 |
| 22 | 2xcs_F_DG5_DT6 | BB2 | BB08 | 80 | 0.31 |
| 23 | 2xcs_F_DT6_DA7 | B-A | BA10 | 30 | 0.41 |
| 24 | 2xcs_F_DA7_DG8 | AAA | AA00 | 69 | 0.26 |
| 25 | 2xcs_F_DG8_DG9 | AAA | AA00 | 87 | 0.24 |
| 26 | 2xcs_F_DG9_DG10 | NAN | NANT | 0 | 0.48 |
| 27 | 2xcs_F_DG10_DC11 | NAN | NANT | 0 | 0.53 |
| 28 | 2xcs_F_DC11_DC12 | BBB | BB01 | 60 | 0.24 |
| 29 | 2xcs_F_DC12_DC13 | B-A | BA01 | 13 | 0.28 |
| 30 | 2xcs_F_DC13_DT14 | AAA | AA00 | 67 | 0.32 |
| 31 | 2xcs_F_DT14_DA15 | A-B | AB04 | 52 | 0.37 |
| 32 | 2xcs_F_DA15_DC16 | B-A | BA05 | 57 | 0.32 |
| 33 | 2xcs_F_DC16_DG17 | NAN | NANT | 0 | 0.45 |
| 34 | 2xcs_F_DG17_DG18 | BBB | BB00 | 85 | 0.17 |
| 35 | 2xcs_F_DG18_DC19 | NAN | NANT | 0 | 0.47 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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