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Conformers: ABBIImiBZICOPNSYNN
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DNA polymerase eta in complex with the cis-diammineplatinum (II) 1,3- GTG intrastrand cross-link

Results of the assignment of 35 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012wtf_O_DC-2_DT-1NANNANT00.84 AB03
022wtf_O_DT-1_DG0NANNANT00.64 BB08
032wtf_O_DG2_DC3NANNANT00.84 AB02
042wtf_O_DC3_DT4A-BAB01290.34 AB01
052wtf_O_DT4_DC5BBBBB00690.30 BB00
062wtf_O_DC5_DA6B12BB04130.23 BB04
072wtf_O_DA6_DC7BBBBB00640.26 BB00
082wtf_O_DC7_DC8BBBBB00640.30 BB00
092wtf_O_DC8_DA9NANNANT00.64 BB08
102wtf_O_DA9_DC10B-ABA01550.25 BA01
112wtf_P_DG1_DT2NANNANT00.35 BB01
122wtf_P_DT2_DG3BB2BB07650.32 BB07
132wtf_P_DG3_DG4BBBBB00440.29 BB00
142wtf_P_DG4_DT5BBBBB01620.28 BB01
152wtf_P_DT5_DG6miBBB10800.27 BB10
162wtf_P_DG6_DA7miBBB10750.35 BB10
172wtf_P_DA7_DG8B12BB04290.25 BB04
182wtf_S_DT-1_DG0NANNANT00.71 BBS1
192wtf_S_DG0_DT1NANNANT01.54 OP26
202wtf_S_DT1_DG2NANNANT01.31 OP31
212wtf_S_DG2_DC3BBBBB00590.20 BB00
222wtf_S_DC3_DT4B-ABA01120.25 BA01
232wtf_S_DT4_DC5A-BAB03620.28 AB03
242wtf_S_DC5_DA6BBwBB02150.49 BB02
252wtf_S_DA6_DC7BBBBB00560.34 BB00
262wtf_S_DC7_DC8B12BB04560.33 BB04
272wtf_S_DC8_DA9BBBBB00110.53 BB00
282wtf_S_DA9_DC10B-ABA05240.35 BA05
292wtf_T_DG1_DT2NANNANT00.34 BB00
302wtf_T_DT2_DG3BB2BB07580.25 BB07
312wtf_T_DG3_DG4NANNANT00.45 BB08
322wtf_T_DG4_DT5BBBBB00310.28 BB00
332wtf_T_DT5_DG6B12BB04550.22 BB04
342wtf_T_DG6_DA7BBBBB00830.15 BB00
352wtf_T_DA7_DG8B12BB04930.13 BB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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