Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Binary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 54 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2w9b_C_DG1_DG2 | BBB | BB01 | 34 | 0.30 |
| 02 | 2w9b_C_DG2_DG3 | BBB | BB00 | 18 | 0.64 |
| 03 | 2w9b_C_DG3_DG4 | BBB | BB00 | 61 | 0.27 |
| 04 | 2w9b_C_DG4_DG5 | NAN | NANT | 0 | 0.42 |
| 05 | 2w9b_C_DG5_DA6 | miB | BB15 | 52 | 0.43 |
| 06 | 2w9b_C_DA6_DA7 | B12 | BB04 | 19 | 0.33 |
| 07 | 2w9b_C_DA7_DG8 | BBB | BB01 | 60 | 0.20 |
| 08 | 2w9b_C_DG8_DG9 | BBB | BB00 | 20 | 0.45 |
| 09 | 2w9b_C_DG9_DA10 | BBB | BB00 | 59 | 0.27 |
| 10 | 2w9b_C_DA10_DT11 | BBB | BB00 | 66 | 0.21 |
| 11 | 2w9b_C_DT11_DT12 | B12 | BB04 | 63 | 0.22 |
| 12 | 2w9b_C_DT12_DC13 | BBB | BB00 | 78 | 0.21 |
| 13 | 2w9b_D_DG1_DG2 | BBB | BB00 | 49 | 0.34 |
| 14 | 2w9b_D_DG2_DG3 | BB2 | BB07 | 58 | 0.39 |
| 15 | 2w9b_D_DG3_DG4 | NAN | NANT | 0 | 0.47 |
| 16 | 2w9b_D_DG4_DG5 | BBB | BB00 | 45 | 0.42 |
| 17 | 2w9b_D_DG5_DA6 | B12 | BB04 | 33 | 0.36 |
| 18 | 2w9b_D_DA6_DA7 | BBB | BB00 | 47 | 0.42 |
| 19 | 2w9b_D_DA7_DG8 | miB | BB15 | 61 | 0.30 |
| 20 | 2w9b_D_DG8_DG9 | BBB | BB00 | 21 | 0.37 |
| 21 | 2w9b_D_DG9_DA10 | BBB | BB00 | 69 | 0.30 |
| 22 | 2w9b_D_DA10_DT11 | BBB | BB00 | 52 | 0.26 |
| 23 | 2w9b_D_DT11_DT12 | B12 | BB04 | 40 | 0.18 |
| 24 | 2w9b_D_DT12_DC13 | BBB | BB01 | 30 | 0.21 |
| 25 | 2w9b_E_DA.E3_DT.E4 | NAN | NANT | 0 | 0.33 |
| 26 | 2w9b_E_DT.E4_O2G.E5 | NAN | NANT | 0 | 0.42 |
| 27 | 2w9b_E_O2G.E5_DG6 | BBB | BB00 | 18 | 0.41 |
| 28 | 2w9b_E_DG6_DA7 | BB2 | BB07 | 25 | 0.31 |
| 29 | 2w9b_E_DA7_DA8 | miB | BB15 | 30 | 0.37 |
| 30 | 2w9b_E_DA8_DT9 | BBB | BB00 | 54 | 0.47 |
| 31 | 2w9b_E_DT9_DC10 | BBB | BB00 | 69 | 0.18 |
| 32 | 2w9b_E_DC10_DC11 | BBB | BB00 | 81 | 0.21 |
| 33 | 2w9b_E_DC11_DT12 | B12 | BB04 | 13 | 0.26 |
| 34 | 2w9b_E_DT12_DT13 | BBB | BB00 | 16 | 0.28 |
| 35 | 2w9b_E_DT13_DC14 | BBB | BB00 | 48 | 0.33 |
| 36 | 2w9b_E_DC14_DC15 | A-B | AB03 | 27 | 0.39 |
| 37 | 2w9b_E_DC15_DC16 | NAN | NANT | 0 | 0.44 |
| 38 | 2w9b_E_DC16_DC17 | BBB | BB00 | 78 | 0.21 |
| 39 | 2w9b_E_DC17_DC18 | NAN | NANT | 0 | 0.33 |
| 40 | 2w9b_F_DA.F3_DT.F4 | BBB | BB00 | 47 | 0.41 |
| 41 | 2w9b_F_DT.F4_O2G.F5 | NAN | NANT | 0 | 0.74 |
| 42 | 2w9b_F_O2G.F5_DG6 | NAN | NANT | 0 | 0.45 |
| 43 | 2w9b_F_DG6_DA7 | NAN | NANT | 0 | 0.44 |
| 44 | 2w9b_F_DA7_DA8 | BBw | BB03 | 24 | 0.44 |
| 45 | 2w9b_F_DA8_DT9 | A-B | AB03 | 67 | 0.40 |
| 46 | 2w9b_F_DT9_DC10 | B12 | BB05 | 37 | 0.38 |
| 47 | 2w9b_F_DC10_DC11 | NAN | NANT | 0 | 0.62 |
| 48 | 2w9b_F_DC11_DT12 | NAN | NANT | 0 | 0.42 |
| 49 | 2w9b_F_DT12_DT13 | BBB | BB01 | 19 | 0.42 |
| 50 | 2w9b_F_DT13_DC14 | NAN | NANT | 0 | 0.43 |
| 51 | 2w9b_F_DC14_DC15 | B12 | BB04 | 37 | 0.37 |
| 52 | 2w9b_F_DC15_DC16 | BBB | BB00 | 27 | 0.43 |
| 53 | 2w9b_F_DC16_DC17 | BBB | BB00 | 68 | 0.27 |
| 54 | 2w9b_F_DC17_DC18 | BB2 | BB07 | 13 | 0.32 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
Show
| Color by conformation group (pyramids) | |
|---|---|
| group | |||||||||
| visible |
| Color by NtC (balls) |
|---|
| A | ||||
|---|---|---|---|---|
| A-B | ||||
|---|---|---|---|---|
| B-A | ||||
|---|---|---|---|---|
| B | ||||
|---|---|---|---|---|
| IC | ||||
|---|---|---|---|---|
| OPN | ||||
|---|---|---|---|---|
| Z | ||||
|---|---|---|---|---|
| N | ||||
|---|---|---|---|---|