Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of the E.coli tRNAArg aminoacyl stem issoacceptor RR-1660 at 2.0 Angstroem resolution
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 24 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2w89_A_G901_C902 | AAA | AA00 | 94 | 0.19 |
| 02 | 2w89_A_C902_A903 | AAA | AA00 | 33 | 0.22 |
| 03 | 2w89_A_A903_U904 | AAA | AA00 | 88 | 0.13 |
| 04 | 2w89_A_U904_C905 | AAA | AA00 | 71 | 0.15 |
| 05 | 2w89_A_C905_C906 | AAA | AA00 | 84 | 0.14 |
| 06 | 2w89_A_C906_G907 | AAA | AA00 | 86 | 0.11 |
| 07 | 2w89_B_C966_G967 | AAA | AA00 | 93 | 0.12 |
| 08 | 2w89_B_G967_G968 | AAA | AA00 | 65 | 0.21 |
| 09 | 2w89_B_G968_A969 | AAA | AA00 | 79 | 0.12 |
| 10 | 2w89_B_A969_U970 | AAA | AA00 | 65 | 0.15 |
| 11 | 2w89_B_U970_G971 | AAA | AA00 | 84 | 0.17 |
| 12 | 2w89_B_G971_C972 | AAA | AA00 | 91 | 0.11 |
| 13 | 2w89_C_G901_C902 | AAA | AA00 | 91 | 0.12 |
| 14 | 2w89_C_C902_A903 | AAA | AA00 | 72 | 0.19 |
| 15 | 2w89_C_A903_U904 | AAA | AA00 | 88 | 0.15 |
| 16 | 2w89_C_U904_C905 | AAA | AA00 | 77 | 0.23 |
| 17 | 2w89_C_C905_C906 | AAA | AA00 | 17 | 0.19 |
| 18 | 2w89_C_C906_G907 | AAA | AA00 | 86 | 0.14 |
| 19 | 2w89_D_C966_G967 | AAA | AA00 | 81 | 0.12 |
| 20 | 2w89_D_G967_G968 | AAA | AA00 | 84 | 0.20 |
| 21 | 2w89_D_G968_A969 | AAA | AA00 | 85 | 0.22 |
| 22 | 2w89_D_A969_U970 | AAA | AA00 | 77 | 0.22 |
| 23 | 2w89_D_U970_G971 | AAA | AA00 | 72 | 0.16 |
| 24 | 2w89_D_G971_C972 | AAA | AA00 | 77 | 0.15 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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