Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal Structure of KorA Bound to Operator DNA: Insight into Repressor Cooperation in RP4 Gene Regulation
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 68 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2w7n_E_DA.A1_DA.A2 | B-A | BA05 | 59 | 0.31 |
| 02 | 2w7n_E_DA.A2_DT.A3 | BBB | BB01 | 70 | 0.19 |
| 03 | 2w7n_E_DT.A3_DG.A4 | BBB | BB01 | 72 | 0.22 |
| 04 | 2w7n_E_DG.A4_DT.A5 | BBB | BB00 | 29 | 0.41 |
| 05 | 2w7n_E_DT.A5_DT.A6 | NAN | NANT | 0 | 0.39 |
| 06 | 2w7n_E_DT.A6_DT.A7 | BBB | BB00 | 19 | 0.41 |
| 07 | 2w7n_E_DT.A7_DA.A8 | BB2 | BB07 | 71 | 0.21 |
| 08 | 2w7n_E_DA.A8_DG.A9 | B-A | BA05 | 45 | 0.24 |
| 09 | 2w7n_E_DG.A9_DC.A10 | AAA | AA02 | 39 | 0.53 |
| 10 | 2w7n_E_DC.A10_DT.A11 | A-B | AB01 | 10 | 0.34 |
| 11 | 2w7n_E_DT.A11_DA.A12 | BBB | BB00 | 47 | 0.34 |
| 12 | 2w7n_E_DA.A12_DA.A13 | BBB | BB00 | 21 | 0.49 |
| 13 | 2w7n_E_DA.A13_DA.A14 | B-A | BA17 | 39 | 0.39 |
| 14 | 2w7n_E_DA.A14_DC.A15 | NAN | NANT | 0 | 0.54 |
| 15 | 2w7n_E_DC.A15_DA.A16 | BBB | BB00 | 12 | 0.28 |
| 16 | 2w7n_E_DA.A16_DA.A17 | BBB | BB01 | 90 | 0.17 |
| 17 | 2w7n_E_DA.A17_DG.A18 | BBB | BB01 | 85 | 0.13 |
| 18 | 2w7n_F_DC.A1_BRU.A2 | NAN | NANT | 0 | 0.65 |
| 19 | 2w7n_F_BRU.A2_BRU.A3 | BBB | BB00 | 74 | 0.19 |
| 20 | 2w7n_F_BRU.A3_DG.A4 | BBB | BB00 | 81 | 0.27 |
| 21 | 2w7n_F_DG.A4_DT.A5 | BBB | BB00 | 69 | 0.37 |
| 22 | 2w7n_F_DT.A5_DT.A6 | BBB | BB01 | 87 | 0.12 |
| 23 | 2w7n_F_DT.A6_DT.A7 | BBB | BB00 | 62 | 0.34 |
| 24 | 2w7n_F_DT.A7_DA.A8 | BB2 | BB07 | 45 | 0.30 |
| 25 | 2w7n_F_DA.A8_DG.A9 | B-A | BA05 | 71 | 0.26 |
| 26 | 2w7n_F_DG.A9_DC.A10 | B-A | BA08 | 41 | 0.29 |
| 27 | 2w7n_F_DC.A10_DT.A11 | A-B | AB01 | 22 | 0.40 |
| 28 | 2w7n_F_DT.A11_DA.A12 | BBB | BB00 | 74 | 0.25 |
| 29 | 2w7n_F_DA.A12_DA.A13 | BBB | BB00 | 64 | 0.38 |
| 30 | 2w7n_F_DA.A13_DA.A14 | BB2 | BB07 | 57 | 0.25 |
| 31 | 2w7n_F_DA.A14_DC.A15 | BBB | BB01 | 54 | 0.31 |
| 32 | 2w7n_F_DC.A15_DA.A16 | B-A | BA05 | 67 | 0.24 |
| 33 | 2w7n_F_DA.A16_BRU.A17 | NAN | NANT | 0 | 0.34 |
| 34 | 2w7n_F_BRU.A17_DT.A18 | AAA | AA02 | 23 | 0.56 |
| 35 | 2w7n_G_DA.B1_DA.B2 | BBB | BB01 | 54 | 0.17 |
| 36 | 2w7n_G_DA.B2_DT.B3 | BBB | BB01 | 89 | 0.19 |
| 37 | 2w7n_G_DT.B3_DG.B4 | BBB | BB00 | 46 | 0.31 |
| 38 | 2w7n_G_DG.B4_DT.B5 | BBB | BB00 | 41 | 0.42 |
| 39 | 2w7n_G_DT.B5_DT.B6 | BBB | BB01 | 96 | 0.10 |
| 40 | 2w7n_G_DT.B6_DT.B7 | BBB | BB00 | 56 | 0.30 |
| 41 | 2w7n_G_DT.B7_DA.B8 | BB2 | BB07 | 78 | 0.27 |
| 42 | 2w7n_G_DA.B8_DG.B9 | B-A | BA05 | 54 | 0.21 |
| 43 | 2w7n_G_DG.B9_DC.B10 | B-A | BA05 | 26 | 0.32 |
| 44 | 2w7n_G_DC.B10_DT.B11 | A-B | AB01 | 66 | 0.29 |
| 45 | 2w7n_G_DT.B11_DA.B12 | BBB | BB00 | 84 | 0.27 |
| 46 | 2w7n_G_DA.B12_DA.B13 | BBB | BB00 | 62 | 0.39 |
| 47 | 2w7n_G_DA.B13_DA.B14 | BB2 | BB07 | 34 | 0.27 |
| 48 | 2w7n_G_DA.B14_DC.B15 | BBB | BB00 | 33 | 0.27 |
| 49 | 2w7n_G_DC.B15_DA.B16 | BBB | BB00 | 12 | 0.46 |
| 50 | 2w7n_G_DA.B16_DA.B17 | B-A | BA05 | 69 | 0.26 |
| 51 | 2w7n_G_DA.B17_DG.B18 | B-A | BA05 | 48 | 0.31 |
| 52 | 2w7n_H_DC.B1_BRU.B2 | BBB | BB00 | 16 | 0.32 |
| 53 | 2w7n_H_BRU.B2_BRU.B3 | BBB | BB01 | 35 | 0.21 |
| 54 | 2w7n_H_BRU.B3_DG.B4 | BBB | BB01 | 64 | 0.27 |
| 55 | 2w7n_H_DG.B4_DT.B5 | BBB | BB00 | 20 | 0.38 |
| 56 | 2w7n_H_DT.B5_DT.B6 | BBB | BB01 | 68 | 0.19 |
| 57 | 2w7n_H_DT.B6_DT.B7 | BBB | BB00 | 24 | 0.33 |
| 58 | 2w7n_H_DT.B7_DA.B8 | BB2 | BB07 | 66 | 0.33 |
| 59 | 2w7n_H_DA.B8_DG.B9 | BBB | BB00 | 72 | 0.20 |
| 60 | 2w7n_H_DG.B9_DC.B10 | B-A | BA01 | 51 | 0.23 |
| 61 | 2w7n_H_DC.B10_DT.B11 | A-B | AB01 | 29 | 0.28 |
| 62 | 2w7n_H_DT.B11_DA.B12 | BBB | BB00 | 76 | 0.27 |
| 63 | 2w7n_H_DA.B12_DA.B13 | BBB | BB00 | 44 | 0.47 |
| 64 | 2w7n_H_DA.B13_DA.B14 | BB2 | BB07 | 14 | 0.22 |
| 65 | 2w7n_H_DA.B14_DC.B15 | BBB | BB00 | 43 | 0.30 |
| 66 | 2w7n_H_DC.B15_DA.B16 | BBB | BB01 | 57 | 0.26 |
| 67 | 2w7n_H_DA.B16_BRU.B17 | BBB | BB00 | 21 | 0.35 |
| 68 | 2w7n_H_BRU.B17_DT.B18 | NAN | NANT | 0 | 0.46 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
Show
| Color by conformation group (pyramids) | |
|---|---|
| group | |||||||||
| visible |
| Color by NtC (balls) |
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| A | ||||
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| A-B | ||||
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| B-A | ||||
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| B | ||||
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| IC | ||||
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| OPN | ||||
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| Z | ||||
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| N | ||||
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