Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structures of endonuclease V with DNA reveal initiation of deaminated adenine repair
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 28 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2w36_C_DG1_DC2 | BBw | BB02 | 24 | 0.53 |
| 02 | 2w36_C_DC2_BRU3 | BBB | BB00 | 62 | 0.24 |
| 03 | 2w36_C_BRU3_DA4 | BBB | BB00 | 44 | 0.33 |
| 04 | 2w36_C_DA4_DC5 | BBB | BB00 | 92 | 0.18 |
| 05 | 2w36_C_DC5_DI6 | NAN | NANT | 0 | 0.72 |
| 06 | 2w36_C_DI6_DG7 | NAN | NANT | 0 | 0.87 |
| 07 | 2w36_C_DG7_DA8 | BBB | BB00 | 18 | 0.37 |
| 08 | 2w36_C_DA8_BRU9 | BBB | BB00 | 87 | 0.22 |
| 09 | 2w36_C_BRU9_DC10 | NAN | NANT | 0 | 0.59 |
| 10 | 2w36_C_DC10_DG11 | NAN | NANT | 0 | 1.00 |
| 11 | 2w36_D_DG18_DT19 | BBB | BB00 | 72 | 0.31 |
| 12 | 2w36_D_DT19_DA20 | BBw | BB02 | 43 | 0.32 |
| 13 | 2w36_D_DA20_DG21 | B12 | BB04 | 77 | 0.30 |
| 14 | 2w36_D_DG21_DC22 | miB | BB13 | 79 | 0.27 |
| 15 | 2w36_E_DG1_DC2 | NAN | NANT | 0 | 0.73 |
| 16 | 2w36_E_DC2_BRU3 | NAN | NANT | 0 | 0.61 |
| 17 | 2w36_E_BRU3_DA4 | BBB | BB00 | 73 | 0.22 |
| 18 | 2w36_E_DA4_DC5 | BBB | BB00 | 92 | 0.19 |
| 19 | 2w36_E_DC5_DI6 | NAN | NANT | 0 | 0.72 |
| 20 | 2w36_E_DI6_DG7 | NAN | NANT | 0 | 0.86 |
| 21 | 2w36_E_DG7_DA8 | BBB | BB00 | 48 | 0.32 |
| 22 | 2w36_E_DA8_BRU9 | BBB | BB00 | 90 | 0.19 |
| 23 | 2w36_E_BRU9_DC10 | NAN | NANT | 0 | 0.78 |
| 24 | 2w36_E_DC10_DG11 | NAN | NANT | 0 | 0.91 |
| 25 | 2w36_F_DG18_DT19 | B12 | BB04 | 76 | 0.31 |
| 26 | 2w36_F_DT19_DA20 | miB | BB13 | 73 | 0.21 |
| 27 | 2w36_F_DA20_DG21 | NAN | NANT | 0 | 0.52 |
| 28 | 2w36_F_DG21_DC22 | BBB | BB00 | 71 | 0.28 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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