Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
The N-terminal domain of MerR-like protein TipAL bound to promoter DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 20 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 2vz4_B_DC-11_DT-10 | A-B | AB01 | 45 | 0.30 |
| 02 | 2vz4_B_DT-10_DC-9 | NAN | NANT | 0 | 0.26 |
| 03 | 2vz4_B_DC-9_DC-8 | AAA | AA00 | 77 | 0.33 |
| 04 | 2vz4_B_DC-8_DT-7 | NAN | NANT | 0 | 0.50 |
| 05 | 2vz4_B_DT-7_DC-6 | miB | BB13 | 51 | 0.35 |
| 06 | 2vz4_B_DC-6_DA-5 | BBB | BB00 | 39 | 0.60 |
| 07 | 2vz4_B_DA-5_DC-4 | miB | BB10 | 55 | 0.45 |
| 08 | 2vz4_B_DC-4_DG-3 | BBB | BB00 | 51 | 0.33 |
| 09 | 2vz4_B_DG-3_DT-2 | BBB | BB00 | 79 | 0.23 |
| 10 | 2vz4_B_DT-2_DC1 | B-A | BA17 | 40 | 0.39 |
| 11 | 2vz4_B_DC1_DA2 | BBB | BB00 | 42 | 0.36 |
| 12 | 2vz4_B_DA2_DC3 | B-A | BA09 | 59 | 0.40 |
| 13 | 2vz4_B_DC3_DG4 | NAN | NANT | 0 | 0.61 |
| 14 | 2vz4_B_DG4_DT5 | BBB | BB00 | 82 | 0.22 |
| 15 | 2vz4_B_DT5_DG6 | miB | BB12 | 28 | 0.61 |
| 16 | 2vz4_B_DG6_DA7 | NAN | NANT | 0 | 0.38 |
| 17 | 2vz4_B_DA7_DG8 | B-A | BA05 | 42 | 0.21 |
| 18 | 2vz4_B_DG8_DG9 | NAN | NANT | 0 | 0.34 |
| 19 | 2vz4_B_DG9_DT10 | NAN | NANT | 0 | 0.52 |
| 20 | 2vz4_B_DT10_DG11 | NAN | NANT | 0 | 0.69 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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| B | ||||
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