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Conformers: ABBIImiBZICOPNSYNN
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Alpha-amanitin inhibited complete RNA polymerase II elongation complex

Results of the assignment of 45 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
012vum_N_DA1_DA2NANNANT00.74 BB00
022vum_N_DA2_DC3BBwBB02370.40 BB02
032vum_N_DC3_DT4BBBBB00770.23 BB00
042vum_N_DT4_DA5BBBBB00620.35 BB00
052vum_N_DA5_DC6BBBBB00620.26 BB00
062vum_N_DC6_DT7BBBBB00800.30 BB00
072vum_N_DT7_DT8BBBBB00710.40 BB00
082vum_N_DT8_DG9BBBBB00810.24 BB00
092vum_N_DG9_DA10BBBBB00820.21 BB00
102vum_N_DA10_DG11B12BB04670.30 BB04
112vum_N_DG11_DC12BBBBB00930.23 BB00
122vum_N_DC12_DT13BBBBB00180.51 BB00
132vum_P_A1_A2AAAAA04320.44 AA04
142vum_P_A2_G3AAAAA00340.25 AA00
152vum_P_G3_A4AAAAA00950.13 AA00
162vum_P_A4_C5AAAAA00830.13 AA00
172vum_P_C5_C6AAAAA00820.11 AA00
182vum_P_C6_A7AAAAA00700.32 AA00
192vum_P_A7_G8AAAAA00650.23 AA00
202vum_P_G8_G9AAAAA00550.34 AA00
212vum_P_G9_C10AAAAA00130.46 AA00
222vum_T_DA4_DG5BBBBB00910.19 BB00
232vum_T_DG5_DC6BBBBB00700.34 BB00
242vum_T_DC6_DT7B12BB04880.17 BB04
252vum_T_DT7_DC8BBBBB00340.29 BB00
262vum_T_DC8_DA9BBBBB00480.39 BB00
272vum_T_DA9_DA10BBBBB00690.32 BB00
282vum_T_DA10_DG11BBBBB00630.38 BB00
292vum_T_DG11_DT12BBBBB00710.23 BB00
302vum_T_DT12_DA13BBBBB00660.30 BB00
312vum_T_DA13_DG14BBBBB00440.28 BB00
322vum_T_DG14_DT15BBBBB00530.43 BB00
332vum_T_DT15_DT16BBBBB00710.29 BB00
342vum_T_DT16_DA17NANNANT00.76 BB00
352vum_T_DA17_DC18NANNANT00.96 BB02
362vum_T_DC18_DG19NANNANT00.88 OP15
372vum_T_DG19_DC20AAAAA0080.28 AA00
382vum_T_DC20_DC21AAAAA00100.35 AA00
392vum_T_DC21_BRU22AAAAA02250.41 AA02
402vum_T_BRU22_DG23NANNANT00.49 AB04
412vum_T_DG23_DG24AAAAA0270.47 AA02
422vum_T_DG24_DT25AAAAA02170.55 AA02
432vum_T_DT25_DC26NANNANT00.25 BB01
442vum_T_DC26_DA27A-BAB01110.23 AB01
452vum_T_DA27_DT28NANNANT00.59 BB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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