DNATCO v4.1: results

Crystal structure of the SRP54-SRP19-7S.S SRP RNA complex of M. jannaschii

Results of the assignment of 190 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	2v3c_M_G142_G143	AAA	AA00	70	0.20	AA00
002	2v3c_M_G143_C144	AAA	AA00	20	0.31	AA00
003	2v3c_M_C144_G145	NAN	NANT	0	0.33	AA04
004	2v3c_M_G145_G146	NAN	NANT	0	0.68	AA08
005	2v3c_M_G146_U147	NAN	NANT	0	1.15	AA13
006	2v3c_M_U147_G148	NAN	NANT	0	0.36	AA10
007	2v3c_M_G148_G149	NAN	NANT	0	0.51	AA10
008	2v3c_M_G149_G150	AAA	AA08	43	0.29	AA08
009	2v3c_M_G150_G151	AAA	AA00	30	0.26	AA00
010	2v3c_M_G151_G152	AAA	AA00	59	0.25	AA00
011	2v3c_M_G152_A153	AAA	AA04	26	0.28	AA04
012	2v3c_M_A153_G154	AAA	AA04	62	0.50	AA04
013	2v3c_M_G154_C155	AAA	AA04	86	0.23	AA04
014	2v3c_M_C155_A156	AAA	AA04	72	0.31	AA04
015	2v3c_M_A156_U157	AAA	AA00	57	0.23	AA00
016	2v3c_M_U157_C158	AAA	AA04	81	0.21	AA04
017	2v3c_M_C158_U159	AAA	AA04	78	0.36	AA04
018	2v3c_M_U159_C160	AAA	AA04	84	0.26	AA04
019	2v3c_M_C160_C161	AAA	AA04	91	0.23	AA04
020	2v3c_M_C161_U162	AAA	AA00	51	0.35	AA00
021	2v3c_M_U162_G163	AAA	AA04	67	0.36	AA04
022	2v3c_M_G163_U164	NAN	NANT	0	1.79	OP11
023	2v3c_M_U164_A165	NAN	NANT	0	1.72	OP17
024	2v3c_M_A165_G166	AAA	AA00	7	0.53	AA00
025	2v3c_M_G166_G167	NAN	NANT	0	0.69	AA05
026	2v3c_M_G167_G168	NAN	NANT	0	0.47	AA03
027	2v3c_M_G168_G169	NAN	NANT	0	0.40	AA10
028	2v3c_M_G169_A170	NAN	NANT	0	0.44	AB04
029	2v3c_M_A170_G171	NAN	NANT	0	0.49	BB13
030	2v3c_M_G171_A172	AAw	AA10	15	0.44	AA10
031	2v3c_M_A172_U173	AAA	AA04	68	0.36	AA04
032	2v3c_M_U173_G174	NAN	NANT	0	0.32	AA03
033	2v3c_M_G174_U175	NAN	NANT	0	0.63	BA10
034	2v3c_M_U175_A176	NAN	NANT	0	2.46	OP17
035	2v3c_M_A176_A177	NAN	NANT	0	0.37	BB16
036	2v3c_M_A177_C178	NAN	NANT	0	1.75	BA16
037	2v3c_M_C178_C179	NAN	NANT	0	0.82	IC03
038	2v3c_M_C179_C180	NAN	NANT	0	0.41	AA10
039	2v3c_M_C180_C181	NAN	NANT	0	0.83	BB02
040	2v3c_M_C181_C182	NAN	NANT	0	0.39	AA10
041	2v3c_M_C182_U183	NAN	NANT	0	0.54	AA10
042	2v3c_M_U183_U184	AAA	AA00	48	0.33	AA00
043	2v3c_M_U184_U185	NAN	NANT	0	0.29	OP04
044	2v3c_M_U185_A186	NAN	NANT	0	0.81	BB2S
045	2v3c_M_A186_C187	NAN	NANT	0	1.56	BA16
046	2v3c_M_C187_C188	NAN	NANT	0	0.35	AA01
047	2v3c_M_C188_U189	AAA	AA08	19	0.50	AA08
048	2v3c_M_U189_G190	AAA	AA00	50	0.21	AA00
049	2v3c_M_G190_C191	AAA	AA08	29	0.27	AA08
050	2v3c_M_C191_C192	AAw	AA06	37	0.39	AA06
051	2v3c_M_C192_G193	NAN	NANT	0	0.46	AB05
052	2v3c_M_G193_A194	NAN	NANT	0	1.62	OP25
053	2v3c_M_A194_A195	NAN	NANT	0	2.03	OP17
054	2v3c_M_A195_C196	NAN	NANT	0	0.47	AA00
055	2v3c_M_C196_C197	NAN	NANT	0	0.68	AA10
056	2v3c_M_C197_C198	NAN	NANT	0	2.03	OP10
057	2v3c_M_C198_C199	NAN	NANT	0	0.45	AA04
058	2v3c_M_C199_G200	AAA	AA08	60	0.26	AA08
059	2v3c_M_G200_C201	AAA	AA04	36	0.47	AA04
060	2v3c_M_C201_C202	NAN	NANT	0	0.67	AA08
061	2v3c_M_C202_A203	NAN	NANT	0	0.41	AA13
062	2v3c_M_A203_G204	NAN	NANT	0	0.66	AA10
063	2v3c_M_G204_G205	AAA	AA08	52	0.43	AA08
064	2v3c_M_G205_C206	AAA	AA04	71	0.42	AA04
065	2v3c_M_C206_C207	NAN	NANT	0	0.40	AA10
066	2v3c_M_C207_C208	NAN	NANT	0	0.40	AA03
067	2v3c_M_C208_G209	AAA	AA08	33	0.27	AA08
068	2v3c_M_G209_G210	NAN	NANT	0	0.41	OP03
069	2v3c_M_G210_A211	NAN	NANT	0	0.62	AA01
070	2v3c_M_A211_A212	AAA	AA00	43	0.34	AA00
071	2v3c_M_A212_G213	AAA	AA04	31	0.77	AA04
072	2v3c_M_G213_G214	NAN	NANT	0	0.42	AA10
073	2v3c_M_G214_G215	AAA	AA00	41	0.23	AA00
074	2v3c_M_G215_A216	AAA	AA03	54	0.25	AA03
075	2v3c_M_A216_G217	AAA	AA04	59	0.48	AA04
076	2v3c_M_G217_C218	AAu	AA12	38	0.44	AA12
077	2v3c_M_C218_A219	AAA	AA04	26	0.32	AA04
078	2v3c_M_A219_A220	NAN	NANT	0	0.58	AB04
079	2v3c_M_A220_C221	AAA	AA08	16	0.34	AA08
080	2v3c_M_C221_G222	AAA	AA03	47	0.24	AA03
081	2v3c_M_G222_G223	AAw	AA01	55	0.19	AA01
082	2v3c_M_G223_U224	AAw	AA10	31	0.37	AA10
083	2v3c_M_U224_A225	AAA	AA08	73	0.28	AA08
084	2v3c_M_A225_G226	AAA	AA08	36	0.50	AA08
085	2v3c_M_G226_G227	AAA	AA00	47	0.36	AA00
086	2v3c_M_G227_C228	AAA	AA04	86	0.30	AA04
087	2v3c_M_C228_A229	AAw	AA06	63	0.22	AA06
088	2v3c_M_A229_G230	AAw	AA11	51	0.34	AA11
089	2v3c_M_G230_G231	AAA	AA08	79	0.21	AA08
090	2v3c_M_G231_A232	AAA	AA08	62	0.25	AA08
091	2v3c_M_A232_C233	NAN	NANT	0	0.43	AA10
092	2v3c_M_C233_G234	AAA	AA00	66	0.24	AA00
093	2v3c_M_G234_U235	AAA	AA04	87	0.25	AA04
094	2v3c_M_U235_C236	AAA	AA00	63	0.25	AA00
095	2v3c_M_C236_G237	NAN	NANT	0	1.85	OP19
096	2v3c_N_G142_G143	AAA	AA04	83	0.29	AA04
097	2v3c_N_G143_C144	AAA	AA08	83	0.24	AA08
098	2v3c_N_C144_G145	AAA	AA00	39	0.34	AA00
099	2v3c_N_G145_G146	NAN	NANT	0	0.67	AA08
100	2v3c_N_G146_U147	NAN	NANT	0	1.29	AA13
101	2v3c_N_U147_G148	AAA	AA04	81	0.28	AA04
102	2v3c_N_G148_G149	AAw	AA10	72	0.26	AA10
103	2v3c_N_G149_G150	AAA	AA00	61	0.22	AA00
104	2v3c_N_G150_G151	AAA	AA00	69	0.15	AA00
105	2v3c_N_G151_G152	AAA	AA04	71	0.33	AA04
106	2v3c_N_G152_A153	AAA	AA04	63	0.38	AA04
107	2v3c_N_A153_G154	AAA	AA00	43	0.31	AA00
108	2v3c_N_G154_C155	AAA	AA00	47	0.30	AA00
109	2v3c_N_C155_A156	AAA	AA04	86	0.18	AA04
110	2v3c_N_A156_U157	AAA	AA08	46	0.23	AA08
111	2v3c_N_U157_C158	AAA	AA00	61	0.25	AA00
112	2v3c_N_C158_U159	AAA	AA04	47	0.28	AA04
113	2v3c_N_U159_C160	NAN	NANT	0	0.53	AA12
114	2v3c_N_C160_C161	AAw	AA01	7	0.32	AA01
115	2v3c_N_C161_U162	AAA	AA08	37	0.27	AA08
116	2v3c_N_U162_G163	AAA	AA04	53	0.40	AA04
117	2v3c_N_G163_U164	NAN	NANT	0	1.06	OP17
118	2v3c_N_U164_A165	NAN	NANT	0	1.11	OP12
119	2v3c_N_A165_G166	NAN	NANT	0	0.52	AA03
120	2v3c_N_G166_G167	NAN	NANT	0	0.63	AA05
121	2v3c_N_G167_G168	AAA	AA04	39	0.41	AA04
122	2v3c_N_G168_G169	NAN	NANT	0	0.93	IC03
123	2v3c_N_G169_A170	AAA	AA04	68	0.36	AA04
124	2v3c_N_A170_G171	AAA	AA04	64	0.25	AA04
125	2v3c_N_G171_A172	NAN	NANT	0	0.40	AA03
126	2v3c_N_A172_U173	NAN	NANT	0	0.49	AA10
127	2v3c_N_U173_G174	AAw	AA10	10	0.37	AA10
128	2v3c_N_G174_U175	AAA	AA03	20	0.40	AA03
129	2v3c_N_U175_A176	NAN	NANT	0	0.78	OP04
130	2v3c_N_A176_A177	A-B	AB01	62	0.30	AB01
131	2v3c_N_A177_C178	NAN	NANT	0	0.37	OP12
132	2v3c_N_C178_C179	NAN	NANT	0	0.39	AA10
133	2v3c_N_C179_C180	NAN	NANT	0	0.34	AA10
134	2v3c_N_C180_C181	NAN	NANT	0	0.75	BB02
135	2v3c_N_C181_C182	NAN	NANT	0	0.42	AA10
136	2v3c_N_C182_U183	AAw	AA01	16	0.53	AA01
137	2v3c_N_U183_U184	AAA	AA08	48	0.28	AA08
138	2v3c_N_U184_U185	OPN	OP03	37	0.46	OP03
139	2v3c_N_U185_A186	NAN	NANT	0	0.74	AA11
140	2v3c_N_A186_C187	NAN	NANT	0	1.67	BA13
141	2v3c_N_C187_C188	AAw	AA01	35	0.34	AA01
142	2v3c_N_C188_U189	AAA	AA08	30	0.39	AA08
143	2v3c_N_U189_G190	AAA	AA04	82	0.22	AA04
144	2v3c_N_G190_C191	AAA	AA00	10	0.43	AA00
145	2v3c_N_C191_C192	AAw	AA01	35	0.23	AA01
146	2v3c_N_C192_G193	NAN	NANT	0	0.67	AA04
147	2v3c_N_G193_A194	NAN	NANT	0	2.37	OP18
148	2v3c_N_A194_A195	NAN	NANT	0	1.63	OP17
149	2v3c_N_A195_C196	AAA	AA08	37	0.49	AA08
150	2v3c_N_C196_C197	AAw	AA01	17	0.44	AA01
151	2v3c_N_C197_C198	NAN	NANT	0	1.88	OP10
152	2v3c_N_C198_C199	NAN	NANT	0	0.50	AA04
153	2v3c_N_C199_G200	AAA	AA08	74	0.29	AA08
154	2v3c_N_G200_C201	AAA	AA00	52	0.41	AA00
155	2v3c_N_C201_C202	NAN	NANT	0	0.65	AA10
156	2v3c_N_C202_A203	NAN	NANT	0	0.49	OP07
157	2v3c_N_A203_G204	AAA	AA04	62	0.48	AA04
158	2v3c_N_G204_G205	AAA	AA08	60	0.42	AA08
159	2v3c_N_G205_C206	AAA	AA00	57	0.32	AA00
160	2v3c_N_C206_C207	AAA	AA04	89	0.23	AA04
161	2v3c_N_C207_C208	AAA	AA00	18	0.27	AA00
162	2v3c_N_C208_G209	AAA	AA04	76	0.35	AA04
163	2v3c_N_G209_G210	NAN	NANT	0	0.35	OP03
164	2v3c_N_G210_A211	AAA	AA04	41	0.36	AA04
165	2v3c_N_A211_A212	AAA	AA04	58	0.36	AA04
166	2v3c_N_A212_G213	AAA	AA08	12	0.71	AA08
167	2v3c_N_G213_G214	AAw	AA01	29	0.48	AA01
168	2v3c_N_G214_G215	AAA	AA08	56	0.26	AA08
169	2v3c_N_G215_A216	AAA	AA08	51	0.30	AA08
170	2v3c_N_A216_G217	AAA	AA08	84	0.38	AA08
171	2v3c_N_G217_C218	AAu	AA12	87	0.37	AA12
172	2v3c_N_C218_A219	AAA	AA04	68	0.21	AA04
173	2v3c_N_A219_A220	NAN	NANT	0	0.52	AA04
174	2v3c_N_A220_C221	AAA	AA08	34	0.32	AA08
175	2v3c_N_C221_G222	AAA	AA08	65	0.26	AA08
176	2v3c_N_G222_G223	AAw	AA01	68	0.17	AA01
177	2v3c_N_G223_U224	AAA	AA08	49	0.27	AA08
178	2v3c_N_U224_A225	AAA	AA08	60	0.29	AA08
179	2v3c_N_A225_G226	AAA	AA04	59	0.56	AA04
180	2v3c_N_G226_G227	AAA	AA03	87	0.39	AA03
181	2v3c_N_G227_C228	NAN	NANT	0	0.26	AA10
182	2v3c_N_C228_A229	NAN	NANT	0	0.56	AA06
183	2v3c_N_A229_G230	AAw	AA11	29	0.45	AA11
184	2v3c_N_G230_G231	AAA	AA03	52	0.32	AA03
185	2v3c_N_G231_A232	AAA	AA04	57	0.28	AA04
186	2v3c_N_A232_C233	AAA	AA04	84	0.24	AA04
187	2v3c_N_C233_G234	AAA	AA00	50	0.17	AA00
188	2v3c_N_G234_U235	AAA	AA08	63	0.23	AA08
189	2v3c_N_U235_C236	NAN	NANT	0	0.39	AA04
190	2v3c_N_C236_G237	NAN	NANT	0	2.03	OP19

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

Browse conformers

Show

Color by conformation group (pyramids)

Color by NtC (balls)

A-B

B-A

B

IC

OPN

Z

N

Results of the assignment of 190 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Download

Restraints

User-based restraints

Definitions

Download the papers

Browse conformers

Show

group
visible